 oriTDB accession number | 100173 |
| Name | oriT_pEC3  |
Sequence Completeness  | incomplete |
| oriT length | 8 nt |
| oriT sequence | CTGGCTTA |
| IR (inverted repeat) | _ |
| Location of nic site | [4-5] nt |
| Conserved sequence flanking the nic site | CTGG|CTTA |
| Note | _ |
Visualization of oriT structure Reference| [1] Nomura N et al (1996) Genetic organization of a DNA-processing region required for mobilization of a non-self-transmissible plasmid, pEC3, isolated from Erwinia carotovora subsp. carotovora. Gene. 170(1):57-62. [PMID:8621089] |
| ID | 166 |
| Name | MobA_pEC3  |
| GenBank accession number | BAA08130 |
| Family | MOBP |
| Length | 498 aa |
| UniProt ID | Q47385 |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 1.80E-16, Aligned region: 41..247 |
| Note | relaxase |
| Protein sequence [Download] | MIVKFHPRGRGGGAGPVDYLLGKDRNRDGASVLQGKPEEVRELIDASPYAKKYTSGVLSF AEQDLPPGQREKLMASFERILMPGLDKDQYSVLWVEHQDKGRLELNFLVPNTELLTGKRL QPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRALVTPSALPEAKQEAAQTITRGLLA LASSGELKTRQDVTEAVESAGFEVLRTTKSSISIADPDGGRNIRLKGAIYEQSFNAGEGL RAEIESARAEYRRDAESRIQRAREVCQSGTERKREENQRRYPRPRPEAVFSHEPAHERDA AHGQPDVADHRAGFRPADRVERGHSVVAGAADTRQLHDHPGAEEHAGDAVREEQRRATHD LWRAETPLREGEPGSGNVRRGFELDDTGGEIAHDGAGKTVVERIRAATAGLLEKAGRVGE RLRGMADDVWSYATGERSAERARHGLEQAGAEFERAAKPVVERLNVIEQRRQYEHSLQLQ KERGSAHQRHYSGRSMEL |
Reference| [1] Nomura N et al (1996) Genetic organization of a DNA-processing region required for mobilization of a non-self-transmissible plasmid, pEC3, isolated from Erwinia carotovora subsp. carotovora. Gene. 170(1):57-62. [PMID:8621089] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 238 | MobB_pEC3 | BAA08131 | 161 aa | MbeB-like, N-term conserved region; pfam04837 |
| 2 | 239 | MobC_pEC3 | BAA08129 | 114 aa | Bacterial mobilisation protein (MobC); pfam05713 |
| ID | 166 |
| Plasmid name | pEC3 |
| GenBank accession number | D45188.1 |
| Genome size | 5.8 kb |
| Coordinate of oriT [Strand] | 797..804 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Erwinia carotovora IFO3380 [554] |
Reference