 oriTDB accession number | 100170 |
| Name | oriT_pXF51  |
Sequence Completeness  | core |
| oriT length | 42 nt |
| oriT sequence | ATAGCGGTTTTAAAACCTATCCTGCCCTAGATTTAACCCTCT |
| IR (inverted repeat) | [6-11] [12-17] nt (GGTTTT..AAAACC) |
| Location of nic site | [24-25] nt |
| Conserved sequence flanking the nic site | TATCCTG|C |
| Note | |
Visualization of oriT structure Reference| ID | 163 |
| Name | VirD2_pXF51 |
| GenBank accession number | WP_052262879 |
| Family | Other |
| Length | 458 aa |
| UniProt ID | _ |
| PDB ID | _ |
| Pfam | |
| Note | Type IV secretory pathway, VirD2 components (relaxase) |
| Protein sequence [Download] |
Reference| # | ID | Name | GenBank | Length | Note |
| 1 | 235 | _ |
| ID | 163 |
| Name | VirD4_pXF51 |
| SecReT4 accesion number | _ |
| GenBank accession number | WP_010895213 |
| Family | VirD4/TraG |
| Length | 656 |
| UniProt ID | Q9PHI9 |
| PDB ID | _ |
| Pfam | T4SS-DNA_transf [PF02534.13], Evalue: 1.10E-107, Aligned region: 77..546 TraG-D_C [PF12696.6], Evalue: 2.40E-24, Aligned region: 379..503 TrwB_AAD_bind [PF10412.8], Evalue: 2.60E-18, Aligned region: 282..522 |
| Note | The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. |
| Protein sequence [Download] | MVIIALVAVVTGVWAYLAGGIFLMAFGHKFEESTPLTLYQYWFYYGAEKQAKKWLYISSG ISLAVLLAPLLFFFSHAEKSLFGDARFAKLREIKNAGLMGKRGIILGLYMNTYLLFGGSQ HVSISAPTRSGKGVGIVIPNLLSWPDSVVCSDIKIENFAITSAYRQKHGQECYLFNPVST EYKTHRYNPLSYISEDPHFRIDDIQKIGNMLFPDVPGTDVIWTATPRSLFLGIVLMLLET QGKLVTFGQVLRETLQDGDGSVYFGKIINERAKAGNPYSGPCIRALNSYISIASENTRSG VMTSFRSKLELWMNPIIDAATSGNDFDLRDLRKKRMSVFVGVTPDNLKRLAPLLNLFYQQ LIDLNTRELPEHNPALKYQCLLMMDEFTALGKLDCLADGISFIAGYGLRLLPIFQSPAQI VGKYGEAAAETFSTNHAAQIIYPPKVTEIKTAREISEWLGFQTVKGVSESKGKGIFTKKS ESQSISDQRRALLLPQEITSLGSKRALVVVEDCPPILAKRIRYFREHVFMDRLKSVSPSL AKFGNKLPNEKQLKAIIESGELAVKVPVIDIDEHICMVSGSTVAQTTVVVQSNGKTEVHV FERLITPADMPNLAKIALANLNIDFSAVEKAKDGQLDEAALHSYVENLSKQSLDNV |
Reference| ID | 163 |
| Plasmid name | pXF51 |
| GenBank accession number | NC_002490.1 |
| Incompatibility group | PromA-like |
| Genome size | 51158 bp |
| Coordinate of oriT [Strand] | 39539..39580 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Xylella fastidiosa 9a5c [160492] |
Reference