 oriTDB accession number | 100169 |
| Name | oriT_pBTK445  |
Sequence Completeness  | core |
| oriT length | 51 nt |
| oriT sequence | AGCCTTTAAAGCGAAAATAGGGTACTCCATGCTCGCTATATCATCCTGACA |
| IR (inverted repeat) | [17-25] [31-39] nt (ATAGGGTAC..GCTCGCTAT) |
| Location of nic site | [48-49] nt |
| Conserved sequence flanking the nic site | CATCCTG|A |
| Note | IncP-like |
Visualization of oriT structure (The oriT was characterized experimentally) Reference| [1] Dam B et al (2009) Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae. Appl Environ Microbiol. 75(13):4362-73. [PMID:19411426] |
| ID | 162 |
| Name | VirD4_pBTK445  |
| SecReT4 accesion number | _ |
| GenBank accession number | ACD43639 |
| Family | VirD4/TraG |
| Length | 297 |
| UniProt ID | B4YK42 |
| PDB ID | _ |
| Pfam | T4SS-DNA_transf [PF02534.13], Evalue: 2.80E-33, Aligned region: 101..277 |
| Note | Type IV secretory pathway, VirD4 component,TraG/TraD family ATPase |
| Protein sequence [Download] | MFFMKKAMIWLAALVACTLVFAVIGQYVGSLVFIRFAKAPIDPGIYVLWDLYKNTQGGGI WSLWQYKVAVVFSVLIALLPIIAGIGAFFFRPQARITWFGQVRHARRDCEAGLLNDSHES PDIIIGKYKGKYLRWGGNQFAFLAAPPRSGKGVGIVIPNCLHYRDSLVVFDPKLENYEIT AGYREAHGQEVYLLHLSTDQFRSHRWNPLSYVKRDPDFAPGGAFSIAYILYPTSGNMSGN SIFFNEMAQKLFVGLCLYLIETENETGVIPSMPALLKLATPRRRGNLWPIGLKRQKK |
Reference| ID | 162 |
| Plasmid name | pBTK445 |
| GenBank accession number | EU585932.1 |
| Incompatibility group | IncP |
| Genome size | 24440 bp |
| Coordinate of oriT [Strand] | 2952..3002 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Tetrathiobacter kashmirensis WGT [310575] |
Reference