 oriTDB accession number | 100156 |
| Name | oriT_pSRQ800  |
Sequence Completeness  | intact |
| oriT length | 415 nt |
| oriT sequence | CATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTCTTC TTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTATAAAATGGGGAGGTG GCGTTTGCCTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTC CCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTACTTTGTATTACAATGTGATAGC TTGCAGTATTTATGGTTTTATAGTTGCTATTTTGTTATGAGGATTGTAACCGAATAGGGC GCAATACTTATTACAAATCAATGACAAAGGGCGATTGAGGAATGAGCGCTGAGGCATTTT ATCTTTGAGTAAGTTATTGATGGATCAGAAAAATGTATCACAAATTGAAACAAAG |
| IR (inverted repeat) | IR1: [91-100] [105-114] nt (CCCATTTTAT..ATAAAATGGG) IR2: [160-172] [176-188] nt (AAAAGGGGAAAGT..ACTTCCCCCTTTT) IR3: [195-208] [221-234] nt (ACATTGTAATACAA..TTGTATTACAATGT) |
| Location of nic site | [243-244] nt |
| Conserved sequence flanking the nic site | CTTG|CA |
| Note | similar to lactococcal plasmids transfer origins (pGL3, pGL4, pCD4, pSRQ900 and pIL7) |
Visualization of oriT structure Reference| [1] Boucher I et al (2001) DNA sequence analysis of three Lactococcus lactis plasmids encoding phage resistance mechanisms. J Dairy Sci. 84(7):1610-20. [PMID:11467810] |
| ID | 150 |
| Plasmid name | pSRQ800 |
| GenBank accession number | NC_004960.1 |
| Genome size | 7858 bp |
| Coordinate of oriT [Strand] | 6826..7240 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Lactococcus lactis W-1 [1358] |
Reference