 oriTDB accession number | 100149 |
| Name | oriT_pHH1107  |
Sequence Completeness  | incomplete |
| oriT length | 8 nt |
| oriT sequence | TATCCTGC |
| IR (inverted repeat) | _ |
| Location of nic site | [7-8] nt |
| Conserved sequence flanking the nic site | TATCCTG|C |
| Note | |
Visualization of oriT structure Reference| [1] Heuer H et al (2009) Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol. 11(4):937-49. [PMID:19055690] |
| ID | 143 |
| Name | MobC_pHH1107 |
| GenBank accession number | YP_006962113 |
| Family | _ |
| Length | 219 aa |
| UniProt ID | B5TTL0 |
| PDB ID | _ |
| Pfam | MobC [PF05713.10], Evalue: 2.00E-05, Aligned region: 164..207 |
| Note | relaxase |
| Protein sequence [Download] | MTKDNKIFFRVDRAVLDWWEAKCEKQGIKKGAPFQKALELSYQKENDPEYSGQDFSLNLE KDLAEKIYHLAKFEEVDPDDLIKKMIKEKLSEIEKTQDVIDVFEKTSRKELRLKPSLMKA INEKAAQIGMKPNQYIISVLTANVTKDSIFFSQEEALKLGESNSQLLAIGRNLNQMAKNM NQGIYESYDREFVERVHQLVKAQVRHVFTLLERNKKRWE |
Reference| [1] Heuer H et al (2009) Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol. 11(4):937-49. [PMID:19055690] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 208 | _ |
| ID | 143 |
| Name | TraN_pHH1107 |
| SecReT4 accesion number | _ |
| GenBank accession number | YP_006962092 |
| Family | VirD4/TraG |
| Length | 707 |
| UniProt ID | B5TTI9 |
| PDB ID | _ |
| Pfam | T4SS-DNA_transf [PF02534.13], Evalue: 5.80E-99, Aligned region: 2..447 TraG-D_C [PF12696.6], Evalue: 1.70E-22, Aligned region: 282..405 TrwB_AAD_bind [PF10412.8], Evalue: 3.30E-14, Aligned region: 21..420 |
| Note | coupling of DNA transfer and mating pair formation |
| Protein sequence [Download] | MGNKGILVGKYHNKYLMLGGQQFVLLAAPTRSGKGVAIVIPNLLNYSDSVVVLDLKLENF LLTSKFRAKNGQKVYLFSPFSEDLKSHKWNPFDTVSHDENFRVGEILAIGRSFYPVTGDA KTDFWNDNANNLFLGLALYLFETEDLPVTMGEVLRQSSGKGKPIQDHIRSIIDERAQSDK PLSDTCLDALNRFLSSPDNTLGNIISTFTSPLTIFANPIVDAATSSSDFKLEDVRRQRMS IYFGVQPNRLGDAKNLINLFYSLLIDVNLKTLPQQDSSLKYQCLVVNDEATAVGKVAKIA DANSFIAGYNIRLLTIIQSIGQLEDVYKTQTRGLVTNHALQIVYPPREQRDANEYSEMLG YFTFKAKSKGQSRSMAWGQGGSNSENESDQRRALMLPQELKELSQDKEIIFMENTKPIMC EKAKYFNDSAFVDRLKSVSPSMKAIKGFPTHKQLEKIAFEDLELSIPIPDLDVKLHKAKI EKRIAAITTVEQAEQIDISSLVIPEFQLDKTVFEDPENPQPEECLQVVDQFFAAIEWEED TEAQNIVDDFFSQVEASAENPVESLVAVGASEQAENLVAADDSDPLAMIAEMKNLIAVDE PEQAENLVAADESDPLAMIAEMENLIAVDEPEQLENLISVDDTEFSYDEMDAEQIVDTFF NCAESEFSIDEDLQDNPVAADEGQNGSIENSDLDDVYQAFSNQVNSK |
Reference| [1] Heuer H et al (2009) Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol. 11(4):937-49. [PMID:19055690] |
| ID | 143 |
| Plasmid name | pHH1107 |
| GenBank accession number | NC_019299.1 |
| Genome size | 57951 bp |
| Coordinate of oriT [Strand] | 26636..26643 [-] |
| Drug resistance |  tetracycline resistance |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Uncultured bacterium HH1107 [558688] |
Reference