oriTDB

The information of the oriT region

oriTDB accession number	100149
Name	oriT_pHH1107
Sequence Completeness	incomplete
oriT length	8 nt
oriT sequence	TATCCTGC
IR (inverted repeat)	_
Location of nic site	[7-8] nt
Conserved sequence flanking the nic site	TATCCTG\|C
Note
	D:7-8

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

TATCCTGC

Reference

[1] Heuer H et al (2009) Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol. 11(4):937-49. [PMID:19055690]

I. Information of Relaxase

ID	143
Name	MobC_pHH1107
GenBank accession number	YP_006962113
Family	_
Length	219 aa
UniProt ID	B5TTL0
PDB ID	_
Pfam	MobC [PF05713.10], Evalue: 2.00E-05, Aligned region: 164..207
Note	relaxase
Protein sequence [Download]	MTKDNKIFFRVDRAVLDWWEAKCEKQGIKKGAPFQKALELSYQKENDPEYSGQDFSLNLE KDLAEKIYHLAKFEEVDPDDLIKKMIKEKLSEIEKTQDVIDVFEKTSRKELRLKPSLMKA INEKAAQIGMKPNQYIISVLTANVTKDSIFFSQEEALKLGESNSQLLAIGRNLNQMAKNM NQGIYESYDREFVERVHQLVKAQVRHVFTLLERNKKRWE

Reference

[1] Heuer H et al (2009) Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol. 11(4):937-49. [PMID:19055690]

II. Auxiliary DNA-binding protein(s) of the relaxosome

#	ID	Name	GenBank	Length	Note
1	208	_

Information of T4CP

ID	143
Name	TraN_pHH1107
SecReT4 accesion number	_
GenBank accession number	YP_006962092
Family	VirD4/TraG
Length	707
UniProt ID	B5TTI9
PDB ID	_
Pfam	T4SS-DNA_transf [PF02534.13], Evalue: 5.80E-99, Aligned region: 2..447 TraG-D_C [PF12696.6], Evalue: 1.70E-22, Aligned region: 282..405 TrwB_AAD_bind [PF10412.8], Evalue: 3.30E-14, Aligned region: 21..420
Note	coupling of DNA transfer and mating pair formation
Protein sequence [Download]	MGNKGILVGKYHNKYLMLGGQQFVLLAAPTRSGKGVAIVIPNLLNYSDSVVVLDLKLENF LLTSKFRAKNGQKVYLFSPFSEDLKSHKWNPFDTVSHDENFRVGEILAIGRSFYPVTGDA KTDFWNDNANNLFLGLALYLFETEDLPVTMGEVLRQSSGKGKPIQDHIRSIIDERAQSDK PLSDTCLDALNRFLSSPDNTLGNIISTFTSPLTIFANPIVDAATSSSDFKLEDVRRQRMS IYFGVQPNRLGDAKNLINLFYSLLIDVNLKTLPQQDSSLKYQCLVVNDEATAVGKVAKIA DANSFIAGYNIRLLTIIQSIGQLEDVYKTQTRGLVTNHALQIVYPPREQRDANEYSEMLG YFTFKAKSKGQSRSMAWGQGGSNSENESDQRRALMLPQELKELSQDKEIIFMENTKPIMC EKAKYFNDSAFVDRLKSVSPSMKAIKGFPTHKQLEKIAFEDLELSIPIPDLDVKLHKAKI EKRIAAITTVEQAEQIDISSLVIPEFQLDKTVFEDPENPQPEECLQVVDQFFAAIEWEED TEAQNIVDDFFSQVEASAENPVESLVAVGASEQAENLVAADDSDPLAMIAEMKNLIAVDE PEQAENLVAADESDPLAMIAEMENLIAVDEPEQLENLISVDDTEFSYDEMDAEQIVDTFF NCAESEFSIDEDLQDNPVAADEGQNGSIENSDLDDVYQAFSNQVNSK

Reference

[1] Heuer H et al (2009) Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol. 11(4):937-49. [PMID:19055690]

Information of plasmid

ID	143
Plasmid name	pHH1107
GenBank accession number	NC_019299.1
Genome size	57951 bp
Coordinate of oriT [Strand]	26636..26643 [-]
Drug resistance	tetracycline resistance
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Uncultured bacterium HH1107 [558688]

Reference
N/A