oriTDB

The information of the oriT region

oriTDB accession number	100142
Name	oriT_pLB925A02
Sequence Completeness	incomplete
oriT length	23 nt
oriT sequence	TAAAGTATATTGGGCTATACCTT
IR (inverted repeat)	[3-9] [16-23] nt (AAGTATA..TATACCTT)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	_
	L:3-9;R:16-23

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

TAAAGTATATTGGGCTATACCTT

Reference

[1] Wada T et al (2009) Characterization of four plasmids harboured in a Lactobacillus brevis strain encoding a novel bacteriocin, brevicin 925A, and construction of a shuttle vector for lactic acid bacteria and Escherichia coli. Microbiology. 155(Pt 5):1726-37. [PMID:19372160]

I. Information of Relaxase

ID	136
Name	MobA_pLB925A02
GenBank accession number	YP_002790952
Family	MOB_V
Length	361 aa
UniProt ID	C0SQL3
PDB ID	_
Pfam	Mob_Pre [PF01076.18], Evalue: 6.40E-72, Aligned region: 1..194
Note	putative plasmid mobilization protein
Protein sequence [Download]	MSYLVANMQKLKADNLVGLGNHDQRRTQHHKNTDIEVDRSGLNYDLVAGRTNHFKTDIAA YINEHKTSQRAVRKDAVLVDEWIISSDSNFFANLTAADTRKYFETAKAYFAEKFGEENVR YAIVHLDESTPHMHMGIVPFDDEYKLSAKRVFNRAALQNVQDQLPTYLQQHGFNIQRGVQ ESERKSLTVPEYKAMREDLKKATLQKQEIQAELEDARKRLAELKPRDQQEIESKPTFLSK DKVVVRKSDLHDLESRAAVSDIYNQQQNRLKLDNQSLNYQLLEVKDNNYELSKKNEKLQK LVDTLQGIVRSVDRFLQRKLGVGLPSEWLERAGLKEPSKNAPQRPQERSEGQHDELDGPS L

Reference

[1] Wada T et al (2009) Characterization of four plasmids harboured in a Lactobacillus brevis strain encoding a novel bacteriocin, brevicin 925A, and construction of a shuttle vector for lactic acid bacteria and Escherichia coli. Microbiology. 155(Pt 5):1726-37. [PMID:19372160]

II. Auxiliary DNA-binding protein(s) of the relaxosome

#	ID	Name	GenBank	Length	Note
1	200	_

N/A

Information of plasmid

ID	136
Plasmid name	pLB925A02
GenBank accession number	NC_012549.1
Genome size	3524 bp
Coordinate of oriT [Strand]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Lactobacillus brevis 925A [1580]

Reference
N/A