oriTDB

The information of the oriT region

oriTDB accession number	100137
Name	oriT_pGNB2
Sequence Completeness	incomplete
oriT length	12 nt
oriT sequence	TTACACCTTGCT
IR (inverted repeat)	_
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	_
	D:

Visualization of oriT structure

Reference

[1] Bönemann G et al (2006) Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant. Antimicrob Agents Chemother. 50(9):3075-80. [PMID:16940104]

I. Information of Relaxase

ID	132
Name	ORF1_pGNB2
GenBank accession number	ABE98193
Family	MOB_P
Length	813 aa
UniProt ID	Q0GY57
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 6.40E-19, Aligned region: 8..256
Note	relaxase/mobilization nuclease topoisomerase/primase fusion protein
Protein sequence [Download]	MKAKVSRGGGFRGALNYVFDVGKEATHTKNAERVGGNMAGNDPRELSREFSAVRQLRPDI GKPVWHCSLSLPPGERLSAEKWEAVTTDFMQRMGFDQTNTPWVAVRHQDTDKDHIHIVAS RVGLDGKVWLGQWEARSAIEATQELEHTHGLTLTPGLGDARAERRKLTDKEINMAVRTGD EPPRQRLQRLLDEAVKDKPTAPELADRLHAAGVGVRANLASTGRMNGFSFEVAGVPFKGS DLGKGYTWAGLQKSGVTYDEARDRAGLERFRPTVADRGERQDVAAVPEPDARGLEAPTGR SLDRDGADLGTAGPTPTGRDAGSGSLRQGDGHSAQDAGRADAADERERGEGVRAEGRGAG QDHLRPVQQPVRAGNEHQQHEADRGAGGGLAGQSGERTEGHDASRQQTDRGSERDAPAPL AAGAGADSGRGRGRDAGSDWASRFKQASAAKRRAADGGLGQRDLEQGHAQGARVAGTDRQ SARELDPTAYLEASGYTVKREGRHLSVKAGGDEAYRVTRQQDGRWLWCDRYGNDGGDNID LVREIEPGTGYAEAVYRLSGAPTVRQQPRPSEPKRQPPQLPAQGLAAREHGRDYLKGRGI SPDTIEHAEKAGMVRYADGGVLFVGYDRTGTAQNATRRAIAPADPVQKRDLRGSDKIYPP ILPGDPAKVWIVEGGPDALALHDIAKRSGQQPPTVIVSGGANVRSFLERDDVQAILKRAE RVTVAGENEKNPEAQAKADAGHQKQAQRVAEITGREVRQWTPKPEHGKDLADMNARQVAE IERKRQAEIEAERARNRELSRKSRGYDGPSFGR

Reference

[1] Bönemann G et al (2006) Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant. Antimicrob Agents Chemother. 50(9):3075-80. [PMID:16940104]

II. Auxiliary DNA-binding protein(s) of the relaxosome

#	ID	Name	GenBank	Length	Note
1	195	MobC_pGNB2	ABE98194	143 aa	auxiliary mobilization protein C

N/A

Information of plasmid

ID	132
Plasmid name	pGNB2
GenBank accession number	DQ460733.1
Incompatibility group	IncQ
Genome size	8469 bp
Coordinate of oriT [Strand]
Drug resistance	quinolone resistance
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Uncultured bacterium [77133]

Reference

[1] Bönemann G et al (2006) Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plant. Antimicrob Agents Chemother. 50(9):3075-80. [PMID:16940104]