 oriTDB accession number | 100133 |
| Name | oriT_pGL3  |
Sequence Completeness  | intact |
| oriT length | 233 nt |
| oriT sequence | CTCTTTTTTTTCTTCTTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTA TAAAATGGGTAGGTGGCGTTTGCCTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGG GGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTA TTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTAT |
| IR (inverted repeat) | IR1: [46-55] [60-69] nt (CCCATTTTAT..ATAAAATGGG) IR2: [115-127] [131-143] nt (AAAAGGGGAAAGT..ACTTCCCCCTTTT) IR3: [150-163] [176-189] nt (ACATTGTAATACAA..TTGTATTACAATGT) |
| Location of nic site | [198-199] nt |
| Conserved sequence flanking the nic site | CTTG|CA |
| Note | 98% DNA identical to oriT of the lactococcal plasmids pCD4, pSRQ800, pSRQ900 and pIL7 |
Visualization of oriT structure Reference| [1] Aguado-Urda M et al (2012) Characterization of plasmids in a human clinical strain of Lactococcus garvieae. PLoS One. 7(6):e40119. [PMID:22768237] |
| ID | 128 |
| Plasmid name | pGL3 |
| GenBank accession number | NC_016970.1 |
| Genome size | 12948 bp |
| Coordinate of oriT [Strand] | 65..297 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Lactococcus garvieae 21881 [1363] |
Reference