oriTDB

The information of the oriT region

oriTDB accession number	100129
Name	oriT_pEC886
Sequence Completeness	intact
oriT length	88 nt
oriT sequence	TCAGCGGGTGTCGGGGCGAAACCCTGACCCAGTCGCGTAGCGACAGCGGAGTGTATACTG GCTTAACCATGCGGCATCAGTGCAGATT
IR (inverted repeat)	[32-36] [40-44] nt (GTCGC..GCGAC)
Location of nic site	[61-62] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	ColE1 superfamily
	L:32-36;R:40-44;D:61-62

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

TCAGCGGGTGTCGGGGCGAAACCCTGACCCAGTCGCGTAGCGACAGCGGAGTGTATACTG

61

GCTTAACCATGCGGCATCAGTGCAGATT

Reference
N/A

N/A

Information of plasmid

ID	124
Plasmid name	pEC886
GenBank accession number	NC_019079.1
Genome size	9261 bp
Coordinate of oriT [Strand]	3500..3587 [-]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Escherichia coli 886 [562]

Reference
N/A