oriTDB

The information of the oriT region

oriTDB accession number	100127
Name	oriT_pLJ42
Sequence Completeness	intact
oriT length	310 nt
oriT sequence	AAAAGCCGATTTGCGAACAGCAAACTTTCGGCTTTTTTTGTGCGGTTTTTTTGTAACCTT TTTTTGCAAAAAAAGGGCAGGTTTTTGGGTTTGAACTTGTGTCGTTTTGCGAAGCGAAAT CGGCATGCTTTTGACTTTGATTTTAGGGGGATAAAAGGGGGAGCTAAGCGCCCTCTTTTC AAGCGGGAATGGGCATACTTTTGCGAAGCAAAATGTATGTCATTCCGAAAGCTTGCAGTA TTTGTTTTTTAATGTTAGGGTAAACGTGACCGAAAAGGAAGCGTTTATACTTACATTAAC TCATTAAAAA
IR (inverted repeat)	IR1: [1-9] [28-36] nt (AAAAGCCGA..TCGGCTTTT) IR2: [57-66] [67-76] nt (TGTCCTTTTTTTG..CAAAAAAAGGGCA) IR3: [153-164] [168-179] nt (AAAAGGGGGAGC..GCGCCCTCTTTT) IR4: [199-204] [208-213] nt (TTTTGC..GCAAAA)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	_
	L:1-9;R:28-36;L:57-66;R:67-76;L:153-164;R:168-179;L:199-204;R:208-213

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

AAAAGCCGATTTGCGAACAGCAAACTTTCGGCTTTTTTTGTGCGGTTTTTTTGTAACCTT

61

TTTTTGCAAAAAAAGGGCAGGTTTTTGGGTTTGAACTTGTGTCGTTTTGCGAAGCGAAAT

121

CGGCATGCTTTTGACTTTGATTTTAGGGGGATAAAAGGGGGAGCTAAGCGCCCTCTTTTC

181

AAGCGGGAATGGGCATACTTTTGCGAAGCAAAATGTATGTCATTCCGAAAGCTTGCAGTA

241

TTTGTTTTTTAATGTTAGGGTAAACGTGACCGAAAAGGAAGCGTTTATACTTACATTAAC

301

TCATTAAAAA

Reference
N/A

I. Information of Relaxase

ID	122
Name	MobA_pLJ42
GenBank accession number	YP_006960783
Family	MOB_P
Length	445 aa
UniProt ID	Q4F8M8
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 5.30E-62, Aligned region: 9..280
Note	relaxase
Protein sequence [Download]	MATIAKITNGASAASALNYALGKDKELHNDTKQWLEDNRLERPPELTNCRAVAVGGTNGI DISIANEQFKIVQQAFNQTARRNQVLRITQSFALNELDPTNTRDWQRANDLGCELAEKLY PDYQTAVYTHLDGQNHILHNHIIINKVNLQTGKKLDERKGSAVERARNANDEISKEQGWK VIEPVREHQSRTEQDLTKKGQYSYMADLRGRIDTTMQDTSICDFKTFSDVLGQSGVIVRE RGQSFSYAFLDANNKQRRARGKRLGTDYDKEAIDNELARRTRERTEQQLDREDQARSTEL VRDTTATDTALEQRERDTEPRKPALNQQSTKIERLGTSMQEINDRGSHAEQIYQRIRPAV RTIADGLQRFTDAVHGFAKQIKQRLADQHLYQDVASRFKADMARKEQAQHKEVKQDLAKR TAPKPQRAPERSTQTYYHDRGGLER

Reference
N/A

II. Auxiliary DNA-binding protein(s) of the relaxosome

N/A

Information of plasmid

ID	122
Plasmid name	pLJ42
GenBank accession number	NC_019219.1
Genome size	5529 bp
Coordinate of oriT [Strand]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Lactobacillus plantarum [1590]

Reference
N/A