oriTDB

The information of the oriT region

oriTDB accession number	100126
Name	oriT_pREN
Sequence Completeness	intact
oriT length	95 nt
oriT sequence	AAAAGCCGATTTGCGAACAGCAAACTTTCGGCTTTTTTTGTGCGGTTTTTTTGTGTCCTT TTTTTGCAAAAAAAGGGCAGGTTTTCGGGTTTGAA
IR (inverted repeat)	IR1: [1-9] [28-36] nt (AAAAGCCGA..TCGGCTTTT) IR2: [54-66] [67-79] nt (TGTCCTTTTTTTG..CAAAAAAAGGGCA)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	almost identical to that of the pLJ42 plasmid (100% query coverage with 97% identity)
	L:1-9;R:28-36;L:54-66;R:67-79

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

AAAAGCCGATTTGCGAACAGCAAACTTTCGGCTTTTTTTGTGCGGTTTTTTTGTGTCCTT

61

TTTTTGCAAAAAAAGGGCAGGTTTTCGGGTTTGAA

Reference

[1] Asteri IA et al (2011) Comparative and evolutionary analysis of plasmid pREN isolated from Lactobacillus rennini, a novel member of the theta-replicating pUCL287 family. FEMS Microbiol Lett. 318(1):18-26. [PMID:21291494]

N/A

Information of plasmid

ID	121
Plasmid name	pREN
GenBank accession number	NC_019233.1
Genome size	4371 bp
Coordinate of oriT [Strand]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Lactobacillus rennini ACA-DC 1534 [238013]

Reference
N/A