 oriTDB accession number | 100104 |
| Name | oriT_pAsa1  |
Sequence Completeness  | incomplete |
| oriT length | 19 nt |
| oriT sequence | TACGGGTGGGCTGGCTAAT |
| IR (inverted repeat) | _ |
| Location of nic site | [14-15] nt |
| Conserved sequence flanking the nic site | CTGG|CTAA |
| Note | ColE2-type |
Visualization of oriT structure Reference| [1] Boyd J et al (2003) Three small, cryptic plasmids from Aeromonas salmonicida subsp. salmonicida A449. Plasmid. 50(2):131-44. [PMID:12932739] |
| ID | 99 |
| Name | MobA_pAsa1 |
| GenBank accession number | AAP69887 |
| Family | MOBP |
| Length | 550 aa |
| UniProt ID | Q79IR8 |
| PDB ID | _ |
| Pfam | Relaxase [PF03432.13], Evalue: 6.90E-10, Aligned region: 52..254 |
| Note | mobilization relaxase |
| Protein sequence [Download] | MLIKFLSHGTGSGARASAYLMGSHDHTGAPRAGVAVQRGDPVLFAAVADSLPFQHRYASA VISWATEEAPTADEITAVLEDFEAVAFAGLEPEDVHLTAVQHDEPDGGVHVHILIPRVHL GTGKSFNPAPPGHRKAFDAVRDKHNHEKGWARPDDPLRARLLRPDFEAFKDKSDKSAIKK QITEHLLGAAAQGVISNAAELQDYLQTSLGCEITRTGADYTSIKPEGYPKAIRLTGELYG SSWTAERTLEREAQTAARAGIGRGGEVSESGARQAQERLRDACGRRAEYNRGRYPGRDKG IAQTDHRLDRPIEGGLGAGPERGQHPQADLQRLAQSLAVRGMHLRGDRAGELGGIELDGQ RGSAVEQRDQQRESHAGAASGRSELRPGGWQELHPRSDIGKNVRNAKWQDGGGDQVNDRI RTPTDRAAGADGAAAPQRDDGLAAAALRATDVFGELAKAVGEHLGRVRDALRQLTHRIRG LGEEHKERASQHGPEFGPDQPGYRSSTWVIEQQCGRSQELAGELDQGAALIADRAAELRK EQRRDRGLSM |
Reference| [1] Boyd J et al (2003) Three small, cryptic plasmids from Aeromonas salmonicida subsp. salmonicida A449. Plasmid. 50(2):131-44. [PMID:12932739] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 144 | MobB_pAsa1 | AAP69888 | 177 aa | mobilization protein |
| 2 | 145 | MobC_pAsa1 | AAP69886 | 136 aa | mobilization protein |
| 3 | 146 | MobD_pAsa1 | AAP69889 | 113 aa | mobilization protein |
| ID | 99 |
| Plasmid name | pAsa1 |
| GenBank accession number | AY301063.1 |
| Genome size | 5424 bp |
| Coordinate of oriT [Strand] | 3260..3278 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Aeromonas salmonicida A449 [382245] |
Reference