 oriTDB accession number | 100094 |
| Name | oriT_pNDM-40-1  |
Sequence Completeness  | incomplete |
| oriT length | 38 nt |
| oriT sequence | AGGGATTCATAAGGGAATTATTCCCTTATGTGGGGCTT |
| IR (inverted repeat) | [8-17] [21-30] nt (CATAAGGGAA..TTCCCTTATG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site | _ |
| Note | |
Visualization of oriT structure Reference| [1] Jones LS et al (2015) Characterization of plasmids in extensively drug-resistant acinetobacter strains isolated in India and Pakistan. Antimicrob Agents Chemother. 59(2):923-9. [PMID:25421466] |
| ID | 89 |
| Name | TraA_pNDM-40-1 |
| GenBank accession number | AHF22521 |
| Family | MOBQ |
| Length | 996 aa |
| UniProt ID | W0FF73 |
| PDB ID | _ |
| Pfam | AAA_30 [PF13604.5], Evalue: 3.70E-45, Aligned region: 371..567 MobA_MobL [PF03389.14], Evalue: 1.50E-26, Aligned region: 47..237 AAA_19 [PF13245.5], Evalue: 1.70E-10, Aligned region: 376..503 Viral_helicase1 [PF01443.17], Evalue: 1.60E-05, Aligned region: 617..736 |
| Note | conjugal transfer relaxase |
| Protein sequence [Download] | MTIAVGMHASAFLSEKQKKQKQKRHKMAIYHLSVKTGRQYGSTGTRGANHYAYINRDGKY KRDDLENIKSGNLPSWATDAKHFWKSADKNERINGRVYTELEISLPRELNKEQREELVEK FVEKTLGENFTYSYAIHSPLASDGQQNPHVHLMFSERKLDGIERDEVKHFKRYNPVNPEK GGAGKDRYFSSKMFVVDTRLEWANHVNDFCENLGIDARIDHRSFKEQGIELSSQNFRADY VSSHKYHINENIKQVRHQNGEIIIERPSEAIKALTSNQSVFSVRELERFLMAHTDGEEQY LKAYESVITCPDMATLYGKDKVVFSSKELVGIEESISTFIYNANEESRIQKPFNLVEKLP LNAVRVAETRTFNSEQEKAFYTLTSTDRITLLNGSAGTGKSYVLSAVSEAYKESDYQVYG IALQAITAKAIANDCDIPSSTIASFLSKYDSGNLEINNKTVLILDEAGMVGSRDMQRLLM LVEKHDAQIKLVGDSYQLSAVSAGHVFANIQENLDKKNIASLEDIQRQKHAKESDKMIQA SKYLSKHEVGKAIDIYKSINMVNEYESHDLALAKTVKSWSEDSSESKLMLAHSNSDVNEL NRMARALLIKQGKLNPESVSVKNYQGDLDISIGEKIVFKQNNSQMKVSNGELAKVIGFEK DKFNNPKAMMVQMESDSRIVRVDLKEYDQFKHGYANTIHSSQGMTVDSAYIVASENMNAN LTYVALTRHKQNIQINYSALTFATNEKETVKTPDGKVSYDHNYKPVEREVTAFENFKKVL GRSETKEFSTDFTLVESKDNLMKSYLNDHRLHLENKRELFGINSKLYSLTSENKTFTKEE IVSEVRASLKSKALLGDEIVKFNGNMNIAKGELVKLTNDLEIKTGLFKKVTFEKGTELKV IDAYKVKDKPVMKARIKNEEYEIPFNKLNLEYSDKYFNEFKDQSKARFDSRHKTEVYTEF REQLLKQKANAPKDNLNAPNQRIKNPNTPNRNTPKY |
Reference| [1] Jones LS et al (2015) Characterization of plasmids in extensively drug-resistant acinetobacter strains isolated in India and Pakistan. Antimicrob Agents Chemother. 59(2):923-9. [PMID:25421466] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 129 | _ |
| ID | 89 |
| Plasmid name | pNDM-40-1 |
| GenBank accession number | KF702385.1 |
| Genome size | 45826 bp |
| Coordinate of oriT [Strand] | 1..38 [+] |
| Drug resistance | harboring blaNDM-1 gene (encoding "New Delhi metal-beta-lactamase enzyme") |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Acinetobacter bereziniae CHI-40-1 [106648] |
Reference| [1] Jones LS et al (2015) Characterization of plasmids in extensively drug-resistant acinetobacter strains isolated in India and Pakistan. Antimicrob Agents Chemother. 59(2):923-9. [PMID:25421466] |