oriTDB

The information of the oriT region

oriTDB accession number	100089
Name	oriT_pAST4
Sequence Completeness	core
oriT length	35 nt
oriT sequence	CCAGAAGAATTCTGGTATACCGTGTTATACCAAAT
IR (inverted repeat)	[1-6] [10-15] nt (CCAGAA..TTCTGG)
Location of nic site	[24-25] nt
Conserved sequence flanking the nic site	TACCGTG\|TTAT
Note	_
	L:1-6;R:10-15;D:24-25

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

CCAGAAGAATTCTGGTATACCGTGTTATACCAAAT

Reference

[1] Alippi AM et al (2014) Tetracycline-resistance encoding plasmids from Paenibacillus larvae, the causal agent of American foulbrood disease, isolated from commercial honeys. Int Microbiol. 17(1):49-61. [PMID:25296446]

N/A

Information of plasmid

ID	84
Plasmid name	pAST4
GenBank accession number	NC_025099.1
Genome size	5031 bp
Coordinate of oriT [Strand]	2926..2960 [+]
Drug resistance	resistance to tetracycline
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Uncultured bacterium AST4 [1328263]

Reference

[1] Alippi AM et al (2014) Tetracycline-resistance encoding plasmids from Paenibacillus larvae, the causal agent of American foulbrood disease, isolated from commercial honeys. Int Microbiol. 17(1):49-61. [PMID:25296446]