oriTDB

The information of the oriT region

oriTDB accession number	100074
Name	oriT_pHDC
Sequence Completeness	core
oriT length	64 nt
oriT sequence	GTAGAATCGTTTAGTATGAGAATAGAAAACCAACGGTTTTCATGAACTTACTAAACGATT CTAC
IR (inverted repeat)	[25,31] [35,41] nt (GAAAACC..GGTTTTC)
Location of nic site	_
Conserved sequence flanking the nic site	_
Note	_
	L:25-31;R:35-41

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GTAGAATCGTTTAGTATGAGAATAGAAAACCAACGGTTTTCATGAACTTACTAAACGATT

61

CTAC

Reference

[1] Satomi M et al (2008) Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce. Int J Food Microbiol. 126(1-2):202-9. [PMID:18573560]

I. Information of Relaxase

ID	70
Name	MobA_pHDC
GenBank accession number	YP_001789040
Family	MOB_P
Length	386 aa
UniProt ID	B1B5H0
PDB ID	_
Pfam	Relaxase [PF03432.13], Evalue: 3.30E-63, Aligned region: 8..248
Note	relaxase
Protein sequence [Download]	MATTHIKRSDSASRLVNYAEKRAVLKDGLNLDVDYAKSQLKQVREVYGNQGKTQAYASRI SFSPKEFDPANENDQQKALEIAKEVYQKTYPNQQVALYEHADTNALHVHAVIGAIDLETG RKMHGNWQEYREKLVHNTDEISQKHGLEVTQVDPNRYEKRTMAEIKMQAKGQPTWKDQIR QAVDGTMANRLITDFQTFRDDLKQKAVDVWERGKDLTYQLTGTNYKARGNKLGTAYEKGE IYHELERRTRDHTETRNPDTARPDRTQPNLERNQELSGHANSITKQTTDRIDRTASTDRT SQSTSQSGFSNDLEQFRKQQRDQQTTINRDAQRRAQTVQRANTQDKSKDNRRLKTDKQRP KEQQRDIGKSQQQSKSNRSRDDGPSR

Reference

[1] Satomi M et al (2008) Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce. Int J Food Microbiol. 126(1-2):202-9. [PMID:18573560]

II. Auxiliary DNA-binding protein(s) of the relaxosome

#	ID	Name	GenBank	Length	Note
1	101	MobB_pHDC	YP_001789041	196 aa	_
2	102	MobC_pHDC	YP_001789039	111 aa	_

N/A

Information of plasmid

ID	70
Plasmid name	pHDC
GenBank accession number	NC_010523.1
Genome size	29924 bp
Coordinate of oriT [Strand]
Drug resistance	_
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Tetragenococcus halophilus H [51669]

Reference

[1] Satomi M et al (2008) Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce. Int J Food Microbiol. 126(1-2):202-9. [PMID:18573560]