oriTDB
The information of the oriT region
oriTDB accession number 100074
Name oriT_pHDC  insolico
Sequence Completeness core
oriT length 64 nt
oriT sequence GTAGAATCGTTTAGTATGAGAATAGAAAACCAACGGTTTTCATGAACTTACTAAACGATT CTAC
IR (inverted repeat)[25,31] [35,41] nt  (GAAAACC..GGTTTTC)
Location of nic site _
Conserved sequence flanking the
  nic site 		_
Note _
L:25-31;R:35-41
Visualization of oriT structure
Reference
[1] Satomi M et al (2008) Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce. Int J Food Microbiol. 126(1-2):202-9. [PMID:18573560]
I. Information of Relaxase
ID 70
Name MobA_pHDC insolico
GenBank accession number YP_001789040
Family MOBP
Length 386 aa
UniProt ID B1B5H0
PDB ID _
Pfam Relaxase [PF03432.13], Evalue: 3.30E-63, Aligned region: 8..248
Note relaxase
Protein sequence [Download] MATTHIKRSDSASRLVNYAEKRAVLKDGLNLDVDYAKSQLKQVREVYGNQGKTQAYASRI
SFSPKEFDPANENDQQKALEIAKEVYQKTYPNQQVALYEHADTNALHVHAVIGAIDLETG
RKMHGNWQEYREKLVHNTDEISQKHGLEVTQVDPNRYEKRTMAEIKMQAKGQPTWKDQIR
QAVDGTMANRLITDFQTFRDDLKQKAVDVWERGKDLTYQLTGTNYKARGNKLGTAYEKGE
IYHELERRTRDHTETRNPDTARPDRTQPNLERNQELSGHANSITKQTTDRIDRTASTDRT
SQSTSQSGFSNDLEQFRKQQRDQQTTINRDAQRRAQTVQRANTQDKSKDNRRLKTDKQRP
KEQQRDIGKSQQQSKSNRSRDDGPSR
Reference
[1] Satomi M et al (2008) Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce. Int J Food Microbiol. 126(1-2):202-9. [PMID:18573560]


II. Auxiliary DNA-binding protein(s) of the relaxosome
# ID Name GenBank Length Note
1 101 MobB_pHDC insolico YP_001789041 196 aa _
2 102 MobC_pHDC insolico YP_001789039 111 aa _
 N/A
Information of plasmid
ID 70
Plasmid name pHDC
GenBank accession number NC_010523.1
Genome size 29924 bp
Coordinate of oriT  [Strand]
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Tetragenococcus halophilus H [51669]
Reference
[1] Satomi M et al (2008) Analysis of a 30 kbp plasmid encoding histidine decarboxylase gene in Tetragenococcus halophilus isolated from fish sauce. Int J Food Microbiol. 126(1-2):202-9. [PMID:18573560]

Microbial Bioinformatics Group in MML, SJTU