 oriTDB accession number | 100070 |
| Name | oriT_pIL1  |
Sequence Completeness  | intact |
| oriT length | 277 nt |
| oriT sequence | ATGGTTTTAGAAAAAAGAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTC TTTTTGTATGACAAAAAGAAAGATCTTTTGCCCATTTTATTTTTATAAAATGGGTAGGTG GCGTTTGCGTAAAGCAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTC CCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGC TTGCAGTATTTATGGTTTTATATGGTCTATTTTGTTG |
| IR (inverted repeat) | IR1: [91-100] [105-114] nt (CCCATTTTAT..ATAAAATGGG) IR2: [160-172] [176-188] nt (AAAAGGGGAAAGT..ACTTCCCCCTTTT) IR3: [195-208] [221-234] nt (ACATTGTAATACAA..TTGTATTACAATGT) |
| Location of nic site | [243-244] nt |
| Conserved sequence flanking the nic site | CTTG|CA |
| Note | similar to pCD4 plasmid oriT; Lactococcus lactis oriT |
Visualization of oriT structure Reference| [1] Górecki RK et al (2011) Adaptative potential of the Lactococcus lactis IL594 strain encoded in its 7 plasmids. PLoS One. 6(7):e22238. [PMID:21789242] |
| ID | 66 |
| Plasmid name | pIL1 |
| GenBank accession number | NC_015860.1 |
| Genome size | 6382 bp |
| Coordinate of oriT [Strand] | |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Lactococcus lactis IL594 [1360] |
Reference