oriTDB
The information of the oriT region
oriTDB accession number 100068
Name oriT_pPAB19-3  insolico
Sequence Completeness intact
oriT length 175 nt
oriT sequence GGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTGAC TATGTTGGCACGGATGTGGAAATCAGTGAAGTGCTTCATGTAGCAGGAGAAAAAAGGCGG CACCAGCGCGTCAGCAGGATATGTAGTACAGGATATATTCCGCTTCCTCGCTCAC
IR (inverted repeat)IR1: [2-11] [15-24] nt  (GTTTCGGGGC..GCCCTGAACC)
IR2: [92-98] [99-105] nt  (TGCTTCA..TGTAGCA)
Location of nic site [55-56] nt
Conserved sequence flanking the
  nic site
CTGG|CTGA
Note ColE1 superfamily
L:2-11;R:15-24;L:92-98;R:99-105;D:55-56
Visualization of oriT structure
Reference
[1] Tran T et al (2012) Small plasmids harboring qnrB19: a model for plasmid evolution mediated by site-specific recombination at oriT and Xer sites. Antimicrob Agents Chemother. 56(4):1821-7. [PMID:22290975]
 N/A
 N/A
Information of plasmid
ID 64
Plasmid name pPAB19-3
GenBank accession number NC_019085.1
Genome size 2989 bp
Coordinate of oriT  [Strand] 677..851 [-]
Drug resistance insolico qnrB19 gene (resistance to quinolones)
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Escherichia coli M9888 [562]
Reference
[1] Tran T et al (2012) Small plasmids harboring qnrB19: a model for plasmid evolution mediated by site-specific recombination at oriT and Xer sites. Antimicrob Agents Chemother. 56(4):1821-7. [PMID:22290975]