oriTDB

The information of the oriT region

oriTDB accession number	100057
Name	oriT1_pSBardo-Kan
Sequence Completeness	core
oriT length	58 nt
oriT sequence	GTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
IR (inverted repeat)	[1-10] [14-23] nt (GTGTCGGGGC..GCCATGACCC)
Location of nic site	[54-55] nt
Conserved sequence flanking the nic site	CTGG\|CTTA
Note	ColE1 superfamily
	L:1-10;R:14-23;D:54-55

Visualization of oriT structure

1...5....10....15....20....25....30....35....40....45....50....55....60

1

GTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA

Reference

[1] Chen CY et al (2011) Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars. Plasmid. 65(3):246-52. [PMID:21324339]

N/A

Information of plasmid

ID	55
Plasmid name	pSBardo-Kan
GenBank accession number	NC_015575.1
Genome size	8198 bp
Coordinate of oriT [Strand]	936..993 [-]; 1522..1790 [-]
Drug resistance	kanamycin resistance
Heavy-metal resistance	_
Virulence factor	_
Xenobiotic degradation	_
Host bacterium [NCBI Taxonomy ID]	Salmonella enterica serovar Bardo strain ARS 886 [932733]

Reference

[1] Chen CY et al (2011) Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars. Plasmid. 65(3):246-52. [PMID:21324339]