 oriTDB accession number | 100024 |
| Name | oriT_pS7b  |
Sequence Completeness  | intact |
| oriT length | 456 nt |
| oriT sequence | TGGATGATCAAACAAAATACGAGAGATTTTTTGTTCGTTCATCCATGGTTTTAGAAAAAA GAGGGACGATTTCGGAAGAAGAAAATCGTCTCTTTTTTTTCTTCTTTTTGTATGACAAAA AGAAAGATCTTTTGCCCATTTTTATTTTTTATAAAATGGGCAGGTGGCGTTTGCGTAAAG CAAATCGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCC ACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATG GTTTTATATTTCCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATGCTTATTAC AAAATCAATGACAAAGGGCGAGTGAGGAATGAGCGCTGAGGCATTTTATCTTTGAGGAAG TTCTTGATGGATCAGAAAAATGTATCACAAATTTAA |
| IR (inverted repeat) | IR1: [133-145] [151-162] nt (TGCCCATTTTTAT..ATAAAATGGGCA) IR2: [206-218] [222-234] nt (AAAAGGGGAAAGT..ACTTCCCCCTTTT) IR3: [241-254] [267-280] nt (ACATTGTAATACAA..TTGTATTACAATGT) |
| Location of nic site | [289-290] nt |
| Conserved sequence flanking the nic site | CTTG|CA |
| Note | Lactococcal plasmid |
Visualization of oriT structure (The oriT was characterized experimentally) Reference| [1] Strahinic I et al (2009) Molecular characterization of plasmids pS7a and pS7b from Lactococcus lactis subsp. lactis bv. diacetylactis S50 as a base for the construction of mobilizable cloning vectors. J Appl Microbiol. 106(1):78-88. [PMID:19040703] |
| ID | 23 |
| Plasmid name | pS7b |
| GenBank accession number | AJ550510.1 |
| Genome size | 7264 bp |
| Coordinate of oriT [Strand] | 415..870 [+] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Lactococcus lactis bv. diacetylactis S50 [44688] |
Reference