oriTDB
The information of the oriT region
oriTDB accession number 100023
Name oriT_pS6  insolico
Sequence Completeness intact
oriT length 482 nt
oriT sequence CGACACAATCCAAAGGGGATAAAAGGGGAAAGTAAAACTTCCCCCTTTTCAAGCCACATT GTAATACAAGAACGAAGTAGTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTT ATATTTCCTATTTTGTTGTGAGGATTGTAACCGAATAGGGCGCAATGCTTATTACAAAAT CAATGACAAAGGGCGATTGAGGAATGAGCGCTGAGGCATTTTATCTTTGAGGAAGTTCTT GATGGATCAGAAAAATGTATCACAAAATCAAACAAAGACTCACTCATTTAAGAGATGCTA CTATCATGAAATTTTGTTGTTGCGATAAGCAACTTCTAATACACGATTTTTAGCCATTAC ATCACTCGTTTTTAGAGTGATGTGTAAGTGCGCATTGCACTCTTTTTTAACGAAACAAGC CGACCAGCGTTTGAAACTCTTTAGTTTTTCATCATTCTATTTTAAAACGCTCTAAAACTC GA
IR (inverted repeat)IR1: [21-33] [37-49] nt  (AAAAGGGGAAAGT..ACTTCCCCCTTTT)
IR2: [55-69] [82-96] nt  (CACATTGTAATACAA..TTGTATTACAATGTG)
Location of nic site [104-105] nt
Conserved sequence flanking the
  nic site 		CTTG|CA
Note _
L: 21-33;R:37-49;L:55-69;R:82-96;D:104-105
Visualization of oriT structure
Reference
[1] Strahinic I et al (2009) Molecular characterization of plasmids pS7a and pS7b from Lactococcus lactis subsp. lactis bv. diacetylactis S50 as a base for the construction of mobilizable cloning vectors. J Appl Microbiol. 106(1):78-88. [PMID:19040703]
 N/A
 N/A
Information of plasmid
ID 22
Plasmid name pS6
GenBank accession number AJ550511.1
Genome size 6.3 kb
Coordinate of oriT  [Strand] _
Drug resistance _
Heavy-metal resistance _
Virulence factor _
Xenobiotic degradation _
Host bacterium [NCBI Taxonomy ID] Lactococcus lactis bv. diacetylactis S50 [44688]
Reference
 N/A

Microbial Bioinformatics Group in MML, SJTU