 oriTDB accession number | 100021 |
| Name | oriT_pDN1  |
Sequence Completeness  | core |
| oriT length | 89 nt |
| oriT sequence | GGCAGTTTCTTGAAGAGAAACCGGTAAGTGCGCCCTCCCGCAAAATGACGGTCGGGGTTT GCGGTGTCTGTGCTCCGATGATAGCATAA |
| IR (inverted repeat) | [5-10] [16-21] nt (GTTTCT..AGAAAC) |
| Location of nic site | [32-33] nt |
| Conserved sequence flanking the nic site | TAAGTGCG|CCCT |
| Note | _ |
Visualization of oriT structure Reference| [1] Whittle G et al (2000) Identification and characterization of a native Dichelobacter nodosus plasmid, pDN1. Plasmid. 43(3):230-4. [PMID:10783302] |
| [2] Francia MV et al (2004) A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev. 28(1):79-100. [PMID:14975531] |
| ID | 20 |
| Name | MobA_pDN1 |
| GenBank accession number | NP_073212 |
| Family | MOBQ |
| Length | 703 aa |
| UniProt ID | Q9EXP9 |
| PDB ID | _ |
| Pfam | RepB_primase [PF16793.4], Evalue: 7.40E-48, Aligned region: 394..641 MobA_MobL [PF03389.14], Evalue: 4.10E-34, Aligned region: 16..218 |
| Note | relaxase |
| Protein sequence [Download] | MAIYHLTAKTGSRNGGQSAKAKADYIQREGRYSRDREEVLHTQSGHLPEWAERPADYWDG ADLYERANGRLFKEIEFALPVELTLDQQRELVDEFARHLTEGERLPYTLAIHAGNGENPH CHLMISERKNDGIERPADQWFKRYNGKQPERGGAQKSESLKPKAWLEQTREAWSHYANRA LEQAGHEARIDHRTLEAQGIERLPGIHLGPNVVEMESRGIRTERADIALAIDTANGQIID LQEYREVIEHERDRQSEEIQRDQRVSGRDRAAGPEHGDTGGRSPAADRRGTAGQRGAGRE LDEPATASHERMAAGSKGHEGSRRGTRQGRPDGPERRPWLDMEVVGRGLDRFRDAYSGAA DRIMALAGAANHRATGEHMADFQAQVKGDRTAQAIARQLKAMGCDRYDIGIRDAASGKMM NREWTPQEVQQNAAWLKRMNAQGNDIYIRPAEQARHGLVLVDDLSSDDLDAMKQEGREPA AIIETSPKNYQAWVKVAQDAPADHRGVIARKLAREYDADPASADSRHYGRLAGFTNRKDK YTSRTGYQPWVLCRESSGKSATAGPELMQQAGQVLDSIERRQERTARLAEITAPQSVRRY RRSVVDDYRSEMAGLVKRYGDDLSKCDFIAAMKLASKGREADEIGKAMAEASPAIMERKA GHEADYIKRTVQKVMELPQVQEARAELAKQTQKQRSKGPDLSM |
Reference| [1] Whittle G et al (2000) Identification and characterization of a native Dichelobacter nodosus plasmid, pDN1. Plasmid. 43(3):230-4. [PMID:10783302] |
| [2] Francia MV et al (2004) A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev. 28(1):79-100. [PMID:14975531] |
| # | ID | Name | GenBank | Length | Note |
| 1 | 31 | MobB_pDN1 | NP_073213 | 136 aa | _ |
| 2 | 32 | MobC_pDN1 | NP_073211 | 99 aa | _ |
| ID | 20 |
| Plasmid name | pDN1 |
| GenBank accession number | NC_002636.1 |
| Incompatibility group | IncQ1 |
| Genome size | 5112 bp |
| Coordinate of oriT [Strand] | 804..892 [-] |
| Drug resistance | _ |
| Heavy-metal resistance | _ |
| Virulence factor | _ |
| Xenobiotic degradation | _ |
| Host bacterium [NCBI Taxonomy ID] | Dichelobacter nodosus 1311 [870] |
Reference