Microbial Bioinformatics Group at MML, SJTU
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Database and tool: |
 ICEberg and ICEfinder: integrative and conjugative elements found in Bacteria. |
| ICEO: a biological ontology for representing and analyzing bacterial integrative and conjugative elements. |
| KpVR: replicons, antibiotic resistance/virulence genes in K. pneumoniae plasmids. |
| oriTDB and oriTfinder: the origin sites of DNA transfer (oriT) in bacterial mobile genetic elements. |
| SecReT4: bacterial type IV secretion systems (T4SS). |
| T4SEfinder: predict type IV secreted effectors (T4SE). |
| SecReT6: bacterial type VI secretion systems (T6SS). |
| ThioBase and ThioFinder: thiopeptides featured in genetics and chemistry. |
| TADB2 and TAfinder: toxin-antitoxin loci in Bacteria and Archaea. |
| VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens. |
| VRprofile: mobile genetic elements, virulence/antibiotic resistance genes. |
| dndDB: phosphorothioation of the DNA backbone. |