Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 2871227..2871887 | Replicon | chromosome |
Accession | NZ_CP027539 | ||
Organism | Serratia marcescens strain AR_0099 |
Toxin (Protein)
Gene name | higB | Uniprot ID | A0A2V4GMA7 |
Locus tag | AM478_RS13535 | Protein ID | WP_033647956.1 |
Coordinates | 2871227..2871580 (+) | Length | 118 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | A0A2V4GQ69 |
Locus tag | AM478_RS13540 | Protein ID | WP_033635213.1 |
Coordinates | 2871585..2871887 (+) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AM478_RS13515 | 2867326..2867691 | + | 366 | WP_033635218.1 | diacylglycerol kinase | - |
AM478_RS13520 | 2867784..2868683 | + | 900 | WP_033647959.1 | LysR family transcriptional regulator | - |
AM478_RS13525 | 2868658..2869464 | - | 807 | WP_033647958.1 | substrate-binding domain-containing protein | - |
AM478_RS13530 | 2869492..2870787 | - | 1296 | WP_033647957.1 | MFS transporter | - |
AM478_RS13535 | 2871227..2871580 | + | 354 | WP_033647956.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
AM478_RS13540 | 2871585..2871887 | + | 303 | WP_033635213.1 | XRE family transcriptional regulator | Antitoxin |
AM478_RS13545 | 2872287..2873495 | + | 1209 | WP_033647955.1 | aldose 1-epimerase family protein | - |
AM478_RS13555 | 2874099..2875217 | + | 1119 | WP_033647954.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
AM478_RS13560 | 2875343..2876257 | + | 915 | WP_004928592.1 | branched-chain amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 118 a.a. Molecular weight: 13460.30 Da Isoelectric Point: 8.9000
>T99252 WP_033647956.1 NZ_CP027539:2871227-2871580 [Serratia marcescens]
VWEIKTTDAFDNWFSSLHDADRAGVLAALMILREKGPGLPRPYADTVKGSRYSNMKELRIQSRGEPLRAFFAFDPYRIGI
VLCAGNKAGNEKRFYDRMIQAADREFTNWLNTLNEKE
VWEIKTTDAFDNWFSSLHDADRAGVLAALMILREKGPGLPRPYADTVKGSRYSNMKELRIQSRGEPLRAFFAFDPYRIGI
VLCAGNKAGNEKRFYDRMIQAADREFTNWLNTLNEKE
Download Length: 354 bp
>T99252 NZ_CP027539:2871227-2871580 [Serratia marcescens]
GTGTGGGAAATTAAAACAACGGATGCGTTTGATAACTGGTTTAGCTCACTCCACGATGCCGATCGGGCTGGCGTGCTTGC
CGCATTGATGATCCTGCGGGAAAAGGGGCCGGGGCTGCCCAGACCCTATGCCGATACGGTTAAAGGTTCGCGTTACAGCA
ATATGAAAGAGCTGCGCATTCAGAGCCGTGGCGAACCGTTGCGGGCATTCTTCGCCTTCGATCCGTACCGTATCGGCATT
GTACTTTGCGCGGGCAATAAAGCCGGTAATGAAAAACGTTTTTACGATCGGATGATCCAGGCTGCCGATCGGGAATTCAC
GAACTGGCTGAACACATTAAACGAGAAGGAGTGA
GTGTGGGAAATTAAAACAACGGATGCGTTTGATAACTGGTTTAGCTCACTCCACGATGCCGATCGGGCTGGCGTGCTTGC
CGCATTGATGATCCTGCGGGAAAAGGGGCCGGGGCTGCCCAGACCCTATGCCGATACGGTTAAAGGTTCGCGTTACAGCA
ATATGAAAGAGCTGCGCATTCAGAGCCGTGGCGAACCGTTGCGGGCATTCTTCGCCTTCGATCCGTACCGTATCGGCATT
GTACTTTGCGCGGGCAATAAAGCCGGTAATGAAAAACGTTTTTACGATCGGATGATCCAGGCTGCCGATCGGGAATTCAC
GAACTGGCTGAACACATTAAACGAGAAGGAGTGA
Antitoxin
Download Length: 101 a.a. Molecular weight: 11079.94 Da Isoelectric Point: 6.4738
>AT99252 WP_033635213.1 NZ_CP027539:2871585-2871887 [Serratia marcescens]
MGRTLEQLIADEKPEVVAKAQALAADIMLNIHLAELREKVQKTQVEMAQALGIRQPTVAVMEKPGRDLKLSSLKRYVEAA
GGKLRLDVELPDGSHYEFVL
MGRTLEQLIADEKPEVVAKAQALAADIMLNIHLAELREKVQKTQVEMAQALGIRQPTVAVMEKPGRDLKLSSLKRYVEAA
GGKLRLDVELPDGSHYEFVL
Download Length: 303 bp
>AT99252 NZ_CP027539:2871585-2871887 [Serratia marcescens]
ATGGGCAGAACGCTGGAACAGCTTATTGCGGATGAAAAGCCCGAGGTCGTGGCCAAAGCGCAAGCGCTGGCGGCTGACAT
CATGCTGAACATCCACCTTGCCGAGCTGCGCGAGAAGGTGCAGAAAACGCAGGTTGAAATGGCGCAGGCGCTGGGTATCC
GGCAACCGACCGTTGCCGTGATGGAAAAACCGGGCCGCGATCTGAAACTGTCTTCGCTCAAACGCTATGTTGAGGCGGCC
GGCGGCAAGCTGCGCCTGGATGTTGAACTGCCGGACGGCTCTCACTACGAATTTGTGCTGTAA
ATGGGCAGAACGCTGGAACAGCTTATTGCGGATGAAAAGCCCGAGGTCGTGGCCAAAGCGCAAGCGCTGGCGGCTGACAT
CATGCTGAACATCCACCTTGCCGAGCTGCGCGAGAAGGTGCAGAAAACGCAGGTTGAAATGGCGCAGGCGCTGGGTATCC
GGCAACCGACCGTTGCCGTGATGGAAAAACCGGGCCGCGATCTGAAACTGTCTTCGCTCAAACGCTATGTTGAGGCGGCC
GGCGGCAAGCTGCGCCTGGATGTTGAACTGCCGGACGGCTCTCACTACGAATTTGTGCTGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2V4GMA7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2V4GQ69 |