Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 2589308..2589810 Replicon chromosome
Accession NZ_CP026828
Organism Shigella dysenteriae strain ATCC 12037

Toxin (Protein)


Gene name yoeB Uniprot ID U9YDH0
Locus tag C1P70_RS13195 Protein ID WP_000767829.1
Coordinates 2589556..2589810 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag C1P70_RS13190 Protein ID WP_001259255.1
Coordinates 2589308..2589559 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1P70_RS13165 (2584485) 2584485..2585552 - 1068 WP_134807073.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -
C1P70_RS13170 (2585552) 2585552..2586622 - 1071 WP_134807074.1 histidinol-phosphate transaminase -
C1P70_RS13175 (2586619) 2586619..2587923 - 1305 WP_001515511.1 histidinol dehydrogenase -
C1P70_RS13180 (2587929) 2587929..2588828 - 900 WP_134807075.1 ATP phosphoribosyltransferase -
C1P70_RS13185 (2588974) 2588974..2589024 - 51 WP_001364200.1 his operon leader peptide -
C1P70_RS13190 (2589308) 2589308..2589559 + 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
C1P70_RS13195 (2589556) 2589556..2589810 + 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
C1P70_RS13200 (2589893) 2589893..2590717 + 825 WP_000754752.1 SDR family oxidoreductase -
C1P70_RS13205 (2590763) 2590763..2591692 + 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
C1P70_RS13210 (2591907) 2591907..2591969 + 63 WP_010723108.1 membrane protein YoeI -
C1P70_RS13215 (2591959) 2591959..2593317 + 1359 WP_097325566.1 putrescine/proton symporter PlaP -
C1P70_RS13220 (2593496) 2593496..2594554 + 1059 WP_134807076.1 thiosulfate utilization transporter TsuA/YeeE -
C1P70_RS13225 (2594568) 2594568..2594795 + 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10183.58 Da        Isoelectric Point: 8.0353

>T96266 WP_000767829.1 NZ_CP026828:2589556-2589810 [Shigella dysenteriae]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

>T96266 NZ_CP026828:2589556-2589810 [Shigella dysenteriae]
GTGAAACTAATCTGGTCTGAGGAGTCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACACCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAGCATAATTTGTCAG
GCTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACTGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT96266 WP_001259255.1 NZ_CP026828:2589308-2589559 [Shigella dysenteriae]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp

>AT96266 NZ_CP026828:2589308-2589559 [Shigella dysenteriae]
ATGCGTACAATTAGTTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATTATTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6NY6
PDB 2A6S
PDB 6OXA
PDB 2A6R
PDB 4V8X
PDB 6OTR
PDB 6OXI
PDB 2A6Q

Antitoxin

Source ID Structure
PDB 2A6Q
AlphaFold DB A0A7U9LNR0

References