Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) hok-sok/-
Location 23910..24168 Replicon chromosome
Accession NZ_CP025703
Organism Escherichia coli strain BH100N substr. MG2017

Toxin (Protein)


Gene name hokC Uniprot ID S1NX00
Locus tag BH100N_RS00130 Protein ID WP_000809168.1
Coordinates 23910..24062 (-) Length 51 a.a.

Antitoxin (RNA)


Gene name sokC
Locus tag -
Coordinates 24111..24168 (+)

Genomic Context


BH100N_RS00120BH100N_RS00125--BH100N_RS00140BH100N_RS00145BH100N_RS00150BH100N_RS00110BH100N_RS00115BH100N_RS00130
Location: 20670..22586 (1917 bp)
Type: Others
Protein ID: WP_000516135.1
Location: 22675..23805 (1131 bp)
Type: Others
Protein ID: WP_001118464.1
Location: 24111..24168 (58 bp)
Type: Antitoxin
Protein ID: -
Location: 24677..25438 (762 bp)
Type: Others
Protein ID: WP_099989640.1
Location: 25458..26951 (1494 bp)
Type: Others
Protein ID: WP_001314416.1
Location: 27080..28339 (1260 bp)
Type: Others
Protein ID: WP_000494927.1
Location: 19155..19868 (714 bp)
Type: Others
Protein ID: WP_001102393.1
Location: 19894..20298 (405 bp)
Type: Others
Protein ID: WP_000843689.1
Location: 23910..24062 (153 bp)
Type: Toxin
Protein ID: WP_000809168.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BH100N_RS0011019155..19868-714WP_001102393.1acidic protein MsyB-
BH100N_RS0011519894..20298-405WP_000843689.1DUF2541 family protein-
BH100N_RS0012020670..22586+1917WP_000516135.1molecular chaperone DnaK-
BH100N_RS0012522675..23805+1131WP_001118464.1molecular chaperone DnaJ-
BH100N_RS0013023910..24062-153WP_000809168.1type I toxin-antitoxin system toxin MokCToxin
-24111..24168+58--Antitoxin
BH100N_RS0014024677..25438+762WP_099989640.1hypothetical protein-
BH100N_RS0014525458..26951+1494WP_001314416.1sulfatase-like hydrolase/transferase-
BH100N_RS0015027080..28339+1260WP_000494927.1hypothetical protein-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(6-47)


Sequences


Toxin        


Download         Length: 51 a.a.        Molecular weight: 5501.57 Da        Isoelectric Point: 7.1312

>T91738 WP_000809168.1 NZ_CP025703:c24062-23910 [Escherichia coli]
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE

Download         Length: 153 bp

>T91738 NZ_CP025703:c24062-23910 [Escherichia coli]
ATGAAGCAGCATAAGGCGATGATTGTCGCCCTGATCGTCATCTGTATCACCGCCGTAGTGGCGGCGCTGGTAACGAGAAA
AGACCTCTGTGAGGTTCACATCCGAACTGGCCAGACGGAGGTTGCTGTTTTCACGGCTTACGAATCCGAGTAA

Antitoxin


Download         Length: 58 bp

>AT91738 NZ_CP025703:24111-24168 [Escherichia coli]
GTTCTGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCTCTA

Similar Proteins


Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures


Toxin

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Source
ID
Structure
AlphaFold DBS1NX00


Antitoxin

Download structure file

References