Detailed information of TA system TA090220

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): mqsRA (relBE)/MqsR-MqsA
• Location: 2443845..2444500
• Replicon: chromosome
• Accession: NZ_CP025375
• Organism: Bordetella pertussis strain I439

Toxin (Protein)

• Gene name: mqsR
• Uniprot ID: -
• Locus tag: CX038_RS11870
• Protein ID: WP_047122780.1
• Coordinates: 2444249..2444500 (-)
• Length: 84 a.a.

Antitoxin (Protein)

• Gene name: mqsA
• Uniprot ID: Q7VY40
• Locus tag: CX038_RS11865
• Protein ID: WP_003809516.1
• Coordinates: 2443845..2444246 (-)
• Length: 134 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CX038_RS11835	2439028..2440050	-	1023	WP_003809532.1	amino acid ABC transporter substrate-binding protein	-
CX038_RS11840	2440187..2441224	-	1038	WP_023853543.1	threonylcarbamoyl-AMP synthase	-
CX038_RS11845	2441244..2442434	-	1191	WP_010930406.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
CX038_RS11850	2442437..2442952	-	516	WP_019247930.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
CX038_RS11855	2443102..2443581	-	480	WP_010930405.1	disulfide bond formation protein B	-
CX038_RS11860	2443589..2443825	-	237	WP_010930404.1	membrane protein	-
CX038_RS11865	2443845..2444246	-	402	WP_003809516.1	type II toxin-antitoxin system MqsA family antitoxin	Antitoxin
CX038_RS11870	2444249..2444500	-	252	WP_047122780.1	type II toxin-antitoxin system MqsR family toxin	Toxin
CX038_RS11875	2444555..2445436	-	882	WP_003809513.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
CX038_RS11880	2445661..2446107	+	447	WP_003819827.1	GFA family protein	-
CX038_RS11885	2446192..2447256	-	1065	WP_003809510.1	fructose-bisphosphate aldolase class II	-
CX038_RS11890	2447393..2447974	-	582	WP_019247931.1	molybdenum cofactor biosysynthesis protein	-
CX038_RS11895	2448209..2449339	+	1131	WP_010930401.1	helix-turn-helix transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase toxin MqsR (10-82)

Antitoxin

• Antitoxin MqsA/HigA-2 (1-131)

Sequences

Toxin

Protein

• Length: 84 a.a.
• Molecular weight: 8952.52 Da
• Isoelectric Point: 9.7242

>T90220 WP_047122780.1 NZ_CP025375:c2444500-2444249 [Bordetella pertussis]
IGGAATKKPGQKRRAGAAALGLDFSAMVEIVLALTPRDFHKSMTTHADHRIWQDVYCPVTAMGAVYLKLTVLDGVPIVSF
KEL

Nucleotide

• Length: 252 bp

>T90220 NZ_CP025375:c2444500-2444249 [Bordetella pertussis]
ATTGGAGGCGCGGCGACAAAAAAGCCGGGACAAAAGCGTCGCGCCGGGGCGGCGGCGCTGGGGCTGGATTTCAGCGCCAT
GGTCGAAATCGTGCTTGCATTGACACCGCGGGATTTCCACAAAAGCATGACTACCCATGCCGACCATCGCATTTGGCAGG
ACGTCTATTGCCCGGTGACAGCGATGGGCGCCGTCTACCTGAAGCTGACGGTCCTCGACGGCGTGCCGATCGTGTCGTTC
AAGGAGTTGTGA

Antitoxin

Protein

• Length: 134 a.a.
• Molecular weight: 14528.70 Da
• Isoelectric Point: 8.5005

>AT90220 WP_003809516.1 NZ_CP025375:c2444246-2443845 [Bordetella pertussis]
MKCPVCGAAALARDTRDVPYSYKGETITIAAVTGDWCPACGENVLDGAESARVSEAMLAFNRLVNARRVDPGFIVRVRRK
LGLDQREAAALFGGGTNAFSRYENGKTRPPLALVKLLRLLDRHPELLEEVRAD

Nucleotide

• Length: 402 bp

>AT90220 NZ_CP025375:c2444246-2443845 [Bordetella pertussis]
ATGAAGTGTCCCGTATGCGGAGCGGCCGCGCTGGCGCGTGATACTCGCGATGTGCCCTATAGCTACAAGGGCGAGACCAT
CACGATTGCGGCGGTGACGGGCGACTGGTGTCCGGCATGCGGCGAGAACGTGCTCGATGGCGCTGAATCGGCGCGGGTGA
GCGAGGCCATGCTGGCTTTCAACCGCCTGGTCAACGCCCGCCGCGTCGACCCCGGGTTCATCGTGCGGGTGCGCAGGAAG
CTGGGGCTGGACCAGCGCGAAGCCGCGGCGCTGTTCGGCGGCGGCACCAATGCGTTCTCGCGTTACGAGAACGGCAAGAC
GCGCCCGCCGCTGGCGCTGGTGAAGCTGCTCAGGCTGCTGGATCGCCATCCGGAGCTGCTGGAGGAAGTCCGTGCGGATT
GA

Structures

Antitoxin

• AlphaFold DB: A0A0H3LKS6