Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 4734395..4734616 Replicon chromosome
Accession NZ_CP024862
Organism Escherichia coli strain AR_0015

Toxin (Protein)


Gene name ldrD Uniprot ID A0A229AEQ8
Locus tag AM342_RS24330 Protein ID WP_000176713.1
Coordinates 4734395..4734502 (-) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 4734550..4734616 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM342_RS24295 4729529..4730611 + 1083 WP_000804726.1 peptide chain release factor 1 -
AM342_RS24300 4730611..4731444 + 834 WP_000456570.1 peptide chain release factor N(5)-glutamine methyltransferase -
AM342_RS24305 4731441..4731833 + 393 WP_000200377.1 invasion regulator SirB2 -
AM342_RS24310 4731837..4732646 + 810 WP_001257044.1 invasion regulator SirB1 -
AM342_RS24315 4732682..4733536 + 855 WP_000811065.1 3-deoxy-8-phosphooctulonate synthase -
AM342_RS24325 4733731..4734189 + 459 WP_000526135.1 IS200/IS605 family transposase -
AM342_RS24330 4734395..4734502 - 108 WP_000176713.1 type I toxin-antitoxin system toxin Ldr family protein Toxin
- 4734550..4734616 + 67 NuclAT_21 - Antitoxin
- 4734550..4734616 + 67 NuclAT_21 - Antitoxin
- 4734550..4734616 + 67 NuclAT_21 - Antitoxin
- 4734550..4734616 + 67 NuclAT_21 - Antitoxin
- 4734550..4734616 + 67 NuclAT_26 - Antitoxin
- 4734550..4734616 + 67 NuclAT_26 - Antitoxin
- 4734550..4734616 + 67 NuclAT_26 - Antitoxin
- 4734550..4734616 + 67 NuclAT_26 - Antitoxin
- 4734550..4734616 + 67 NuclAT_31 - Antitoxin
- 4734550..4734616 + 67 NuclAT_31 - Antitoxin
- 4734550..4734616 + 67 NuclAT_31 - Antitoxin
- 4734550..4734616 + 67 NuclAT_31 - Antitoxin
- 4734550..4734616 + 67 NuclAT_36 - Antitoxin
- 4734550..4734616 + 67 NuclAT_36 - Antitoxin
- 4734550..4734616 + 67 NuclAT_36 - Antitoxin
- 4734550..4734616 + 67 NuclAT_36 - Antitoxin
- 4734550..4734616 + 67 NuclAT_38 - Antitoxin
- 4734550..4734616 + 67 NuclAT_38 - Antitoxin
- 4734550..4734616 + 67 NuclAT_38 - Antitoxin
- 4734550..4734616 + 67 NuclAT_38 - Antitoxin
- 4734550..4734616 + 67 NuclAT_43 - Antitoxin
- 4734550..4734616 + 67 NuclAT_43 - Antitoxin
- 4734550..4734616 + 67 NuclAT_43 - Antitoxin
- 4734550..4734616 + 67 NuclAT_43 - Antitoxin
- 4734552..4734615 + 64 NuclAT_46 - -
- 4734552..4734615 + 64 NuclAT_46 - -
- 4734552..4734615 + 64 NuclAT_46 - -
- 4734552..4734615 + 64 NuclAT_46 - -
- 4734552..4734615 + 64 NuclAT_48 - -
- 4734552..4734615 + 64 NuclAT_48 - -
- 4734552..4734615 + 64 NuclAT_48 - -
- 4734552..4734615 + 64 NuclAT_48 - -
AM342_RS24335 4734930..4735037 - 108 WP_000170955.1 small toxic polypeptide LdrA/LdrC -
- 4735090..4735151 + 62 NuclAT_45 - -
- 4735090..4735151 + 62 NuclAT_45 - -
- 4735090..4735151 + 62 NuclAT_45 - -
- 4735090..4735151 + 62 NuclAT_45 - -
- 4735090..4735151 + 62 NuclAT_47 - -
- 4735090..4735151 + 62 NuclAT_47 - -
- 4735090..4735151 + 62 NuclAT_47 - -
- 4735090..4735151 + 62 NuclAT_47 - -
- 4735090..4735152 + 63 NuclAT_22 - -
- 4735090..4735152 + 63 NuclAT_22 - -
- 4735090..4735152 + 63 NuclAT_22 - -
- 4735090..4735152 + 63 NuclAT_22 - -
- 4735090..4735152 + 63 NuclAT_27 - -
- 4735090..4735152 + 63 NuclAT_27 - -
- 4735090..4735152 + 63 NuclAT_27 - -
- 4735090..4735152 + 63 NuclAT_27 - -
- 4735090..4735152 + 63 NuclAT_32 - -
- 4735090..4735152 + 63 NuclAT_32 - -
- 4735090..4735152 + 63 NuclAT_32 - -
- 4735090..4735152 + 63 NuclAT_32 - -
- 4735090..4735152 + 63 NuclAT_37 - -
- 4735090..4735152 + 63 NuclAT_37 - -
- 4735090..4735152 + 63 NuclAT_37 - -
- 4735090..4735152 + 63 NuclAT_37 - -
- 4735090..4735152 + 63 NuclAT_39 - -
- 4735090..4735152 + 63 NuclAT_39 - -
- 4735090..4735152 + 63 NuclAT_39 - -
- 4735090..4735152 + 63 NuclAT_39 - -
- 4735090..4735152 + 63 NuclAT_44 - -
- 4735090..4735152 + 63 NuclAT_44 - -
- 4735090..4735152 + 63 NuclAT_44 - -
- 4735090..4735152 + 63 NuclAT_44 - -
AM342_RS24345 4735443..4736543 - 1101 WP_001309461.1 sodium-potassium/proton antiporter ChaA -
AM342_RS24350 4736813..4737043 + 231 WP_001146444.1 putative cation transport regulator ChaB -
AM342_RS24355 4737201..4737896 + 696 WP_001295621.1 glutathione-specific gamma-glutamylcyclotransferase -
AM342_RS24360 4737940..4738293 - 354 WP_001169659.1 DsrE/F sulfur relay family protein YchN -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 4733731..4734189 458


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 4031.79 Da        Isoelectric Point: 11.4779

>T88965 WP_000176713.1 NZ_CP024862:c4734502-4734395 [Escherichia coli]
MTLTQFAMTFWHDLAAPILAGIITAAIVSWWRNRK

Download         Length: 108 bp

>T88965 NZ_CP024862:c4734502-4734395 [Escherichia coli]
ATGACGCTCACGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 67 bp

>AT88965 NZ_CP024862:4734550-4734616 [Escherichia coli]
GTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTATACCTCTCAACGTGCGGGGGTTTTCTC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A229AEQ8

Antitoxin

Download structure file

References