Detailed information of TA system TA088546

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): hok-sok/-
• Location: 69155..69394
• Replicon: plasmid pAMA1167-NDM-5
• Accession: NZ_CP024805
• Organism: Escherichia coli strain AMA1167

Toxin (Protein)

• Gene name: srnB
• Uniprot ID: A0A762TWR7
• Locus tag: CUC42_RS25010
• Protein ID: WP_023144756.1
• Coordinates: 69155..69289 (-)
• Length: 45 a.a.

Antitoxin (RNA)

Gene name	srnC
Locus tag	-
Coordinates	69334..69394 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CUC42_RS24980	64856..65713	-	858	WP_000130640.1	incFII family plasmid replication initiator RepA	-
CUC42_RS24985	65706..65780	-	75	WP_031943482.1	RepA leader peptide Tap	-
CUC42_RS26020	65777..65911	-	135	Protein_80	protein CopA/IncA	-
CUC42_RS24995	66142..67683	+	1542	WP_002431311.1	IS21-like element ISEc12 family transposase	-
CUC42_RS25000	67698..68444	+	747	WP_001016257.1	IS21-like element ISEc12 family helper ATPase IstB	-
CUC42_RS25005	68604..68858	-	255	WP_000083850.1	replication regulatory protein RepA	-
CUC42_RS25010	69155..69289	-	135	WP_023144756.1	type I toxin-antitoxin system Hok family toxin	Toxin
-	69334..69394	+	61	NuclAT_0	-	Antitoxin
-	69334..69394	+	61	NuclAT_0	-	Antitoxin
-	69334..69394	+	61	NuclAT_0	-	Antitoxin
-	69334..69394	+	61	NuclAT_0	-	Antitoxin
CUC42_RS26025	69361..69647	-	287	Protein_85	DUF2726 domain-containing protein	-
CUC42_RS25025	70160..70372	-	213	WP_013023861.1	hypothetical protein	-
CUC42_RS25030	70503..71063	-	561	WP_000139341.1	fertility inhibition protein FinO	-
CUC42_RS25035	71118..71864	-	747	WP_000205718.1	conjugal transfer pilus acetylase TraX	-
CUC42_RS25040	71884..74277	-	2394	Protein_89	AAA family ATPase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	tet(B) / sul1 / qacE / aadA5 / blaNDM-5 / aadA2 / dfrA12 / blaTEM-1B / aac(3)-IId / mph(A) / aph(6)-Id / aph(3'')-Ib / sul2 / blaCTX-M-15 / blaOXA-1 / aac(6')-Ib-cr	-	1..111310	111310

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Hok/gef cell toxic protein (4-44)

Sequences

Toxin

Protein

• Length: 45 a.a.
• Molecular weight: 4896.90 Da
• Isoelectric Point: 7.7209

>T88546 WP_023144756.1 NZ_CP024805:c69289-69155 [Escherichia coli]
MTKYTLIGLLAVCATVLCFSLIFREQLCELNIHRGNTVVQVTLA

Nucleotide

• Length: 135 bp

>T88546 NZ_CP024805:c69289-69155 [Escherichia coli]
ATGACGAAATATACCCTTATCGGGTTGCTTGCCGTGTGCGCCACGGTGTTGTGTTTTTCACTGATATTCAGGGAACAGTT
ATGTGAACTGAATATTCACAGGGGAAATACAGTGGTGCAGGTAACTCTGGCCTGA

Antitoxin

Nucleotide

• Length: 61 bp

>AT88546 NZ_CP024805:69334-69394 [Escherichia coli]
TAAAGTGCATCATGCAGACCTCACGAGTTAATGGATTAACGAGTGGGGTCTTCGCATTTCT

Structures

Toxin

• AlphaFold DB: A0A762TWR7

Antitoxin