Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 4444619..4445121 Replicon chromosome
Accession NZ_CP024717
Organism Escherichia coli strain LS4

Toxin (Protein)


Gene name yoeB Uniprot ID E2QNP2
Locus tag CUB99_RS22910 Protein ID WP_000767819.1
Coordinates 4444867..4445121 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID E2QNP3
Locus tag CUB99_RS22905 Protein ID WP_001259253.1
Coordinates 4444619..4444870 (+) Length 84 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CUB99_RS22870 4439797..4440864 - 1068 WP_000080057.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -
CUB99_RS22875 4440864..4441934 - 1071 WP_000108967.1 histidinol-phosphate transaminase -
CUB99_RS22880 4441931..4443235 - 1305 WP_001296211.1 histidinol dehydrogenase -
CUB99_RS22885 4443241..4444140 - 900 WP_000131782.1 ATP phosphoribosyltransferase -
CUB99_RS22895 4444286..4444336 - 51 WP_001364200.1 his operon leader peptide -
CUB99_RS22905 4444619..4444870 + 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
CUB99_RS22910 4444867..4445121 + 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
CUB99_RS22915 4445204..4446028 + 825 WP_000754737.1 SDR family oxidoreductase -
CUB99_RS22920 4446074..4447003 + 930 WP_000803366.1 LysR family transcriptional regulator -
CUB99_RS22925 4447218..4447280 + 63 WP_010723108.1 membrane protein YoeI -
CUB99_RS22930 4447270..4448628 + 1359 WP_000019194.1 putrescine/proton symporter PlaP -
CUB99_RS22940 4448845..4449303 + 459 WP_001531805.1 IS200/IS605-like element IS200C family transposase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 4448845..4449303 458


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(2-84)

Antitoxin

(1-72)


Sequences


Toxin        


Download         Length: 85 a.a.        Molecular weight: 10110.53 Da        Isoelectric Point: 7.2749

>T88443 WP_000767819.1 NZ_CP024717:4444867-4445121 [Escherichia coli]
VKLIWSEESWDDYLYWQEADKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHLLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

>T88443 NZ_CP024717:4444867-4445121 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAGCAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACACCATTTGAAGGTAAGGGGAAACCAGAACCCCTGAAACATAACTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCTTCTGGTATACGCGGTTACTGATGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9365.62 Da        Isoelectric Point: 4.6127

>AT88443 WP_001259253.1 NZ_CP024717:4444619-4444870 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSDKGTEKD
IIE

Download         Length: 252 bp

>AT88443 NZ_CP024717:4444619-4444870 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTCATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGACAAAGGAACGGAAAAGGAC
ATTATTGAGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB E2QNP2


Antitoxin

Source ID Structure
AlphaFold DB E2QNP3

References