Detailed information of TA system TA087038

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/RelE-HTH
• Location: 2602853..2603466
• Replicon: chromosome
• Accession: NZ_CP024171
• Organism: Bordetella bronchiseptica strain D448

Toxin (Protein)

• Gene name: higB
• Uniprot ID: K0MEM3
• Locus tag: CS344_RS12225
• Protein ID: WP_003811545.1
• Coordinates: 2602853..2603164 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: CS344_RS12230
• Protein ID: WP_003811547.1
• Coordinates: 2603167..2603466 (+)
• Length: 100 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CS344_RS12200	2597994..2598560	-	567	WP_015039900.1	LamB/YcsF family protein	-
CS344_RS12205	2598557..2599951	-	1395	WP_010926625.1	arylsulfatase	-
CS344_RS12210	2599966..2600928	-	963	WP_003811538.1	tripartite tricarboxylate transporter substrate binding protein	-
CS344_RS12215	2601044..2601997	+	954	WP_033446744.1	LysR family transcriptional regulator	-
CS344_RS12220	2602116..2602739	+	624	WP_003811542.1	glutathione S-transferase family protein	-
CS344_RS12225	2602853..2603164	+	312	WP_003811545.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
CS344_RS12230	2603167..2603466	+	300	WP_003811547.1	helix-turn-helix domain-containing protein	Antitoxin
CS344_RS12235	2603480..2606553	-	3074	Protein_2412	autotransporter SphB2	-
CS344_RS12240	2606683..2607357	+	675	WP_003811550.1	response regulator transcription factor	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-2 (42-102)

Antitoxin

• Cro/C1-type helix-turn-helix domain (39-96)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 11810.72 Da
• Isoelectric Point: 8.8245

>T87038 WP_003811545.1 NZ_CP024171:2602853-2603164 [Bordetella bronchiseptica]
MEFIETPIFTQLITALLSDEEYSRLQQLLIDNPERGDLLRGGGGIRKMRYGRQGTGKRGGIRVIYYWISQDCQIYMLAAY
AKSKKINLTPDEIAALRELVKEL

Nucleotide

• Length: 312 bp

>T87038 NZ_CP024171:2602853-2603164 [Bordetella bronchiseptica]
ATGGAGTTCATCGAAACCCCAATTTTCACGCAATTGATCACCGCGTTGCTGTCGGATGAGGAATATTCCAGGCTGCAACA
GCTGCTGATCGACAACCCCGAAAGGGGCGATCTGCTGCGTGGGGGCGGCGGTATACGAAAGATGCGTTACGGCCGGCAAG
GCACGGGCAAGCGAGGTGGCATCCGGGTCATTTATTACTGGATCAGCCAGGATTGTCAGATCTACATGCTTGCGGCTTAT
GCAAAGTCGAAGAAGATCAACCTGACCCCGGACGAAATCGCGGCGCTGCGCGAACTGGTCAAGGAGCTGTAA

Antitoxin

Protein

• Length: 100 a.a.
• Molecular weight: 10946.70 Da
• Isoelectric Point: 11.2467

>AT87038 WP_003811547.1 NZ_CP024171:2603167-2603466 [Bordetella bronchiseptica]
MKKDNTVFNDLQASLKQAVAIRQGKMPPSRVFKVETVDVKATREKTHMSQTEFAKAIHVSVRTLQNWEQGHRNPTGPAVA
LLKIVASAPDIAVRALRTA

Nucleotide

• Length: 300 bp

>AT87038 NZ_CP024171:2603167-2603466 [Bordetella bronchiseptica]
ATGAAAAAAGACAACACGGTGTTCAACGACCTGCAAGCCAGCCTGAAGCAAGCCGTGGCCATTCGCCAAGGCAAGATGCC
GCCATCGCGTGTATTCAAGGTTGAGACTGTGGATGTGAAGGCAACGCGCGAAAAAACGCACATGTCTCAAACGGAATTCG
CCAAAGCCATCCACGTCAGTGTCCGTACGCTGCAGAACTGGGAGCAAGGTCACCGCAATCCGACGGGCCCTGCCGTGGCG
CTTCTGAAAATCGTGGCAAGCGCCCCGGACATTGCCGTGCGAGCGCTGCGGACCGCGTAA

Structures

Toxin

• AlphaFold DB: K0MEM3