Detailed information of TA system TA086295

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HTH(antitoxin)
• Location: 4499114..4499716
• Replicon: chromosome
• Accession: NZ_CP023853
• Organism: Escherichia coli strain 2/0

Toxin (Protein)

• Gene name: higB
• Uniprot ID: S1P416
• Locus tag: CRT29_RS22470
• Protein ID: WP_000897302.1
• Coordinates: 4499114..4499425 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: CRT29_RS22475
• Protein ID: WP_000356397.1
• Coordinates: 4499426..4499716 (+)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CRT29_RS22445	4495028..4495627	+	600	WP_001296610.1	glucose-1-phosphatase	-
CRT29_RS22450	4495621..4496493	+	873	WP_000920762.1	virulence factor BrkB family protein	-
CRT29_RS22455	4496490..4496927	+	438	WP_000560981.1	D-tyrosyl-tRNA(Tyr) deacylase	-
CRT29_RS22460	4496972..4497913	+	942	WP_001297068.1	fatty acid biosynthesis protein FabY	-
CRT29_RS22465	4497977..4498885	-	909	WP_001385591.1	alpha/beta hydrolase	-
CRT29_RS22470	4499114..4499425	+	312	WP_000897302.1	hypothetical protein	Toxin
CRT29_RS22475	4499426..4499716	+	291	WP_000356397.1	helix-turn-helix domain-containing protein	Antitoxin
CRT29_RS22485	4500075..4500353	+	279	WP_001296612.1	hypothetical protein	-
CRT29_RS22495	4500750..4500968	+	219	WP_001251293.1	ribbon-helix-helix domain-containing protein	-
CRT29_RS22500	4501153..4501602	-	450	WP_032140890.1	hypothetical protein	-
CRT29_RS22505	4501918..4502766	-	849	WP_001038650.1	hypothetical protein	-
CRT29_RS22510	4503056..4503298	+	243	WP_001068514.1	ribbon-helix-helix domain-containing protein	-
CRT29_RS22515	4503480..4504409	-	930	WP_000027696.1	formate dehydrogenase accessory protein FdhE	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Cro/C1-type helix-turn-helix domain (36-85)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 12203.19 Da
• Isoelectric Point: 9.7791

>T86295 WP_000897302.1 NZ_CP023853:4499114-4499425 [Escherichia coli]
MLFIETEIFTEDVQKLLNDDEFSRFQFFLALNPDYGEVIPETGGLRKVRWVSGGKGKRAGVRVIYFHQVKHYEIRLLLIY
RKGIKDDLSPQEKAMLRLLNTRW

Nucleotide

• Length: 312 bp

>T86295 NZ_CP023853:4499114-4499425 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGAACGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTCTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10846.43 Da
• Isoelectric Point: 10.8907

>AT86295 WP_000356397.1 NZ_CP023853:4499426-4499716 [Escherichia coli]
MDKALFERLTHSMAQMNEIIEGTRQPSRTFEVDAMKIKEIRRASGLSQSKFADLISVSVDTLRNWEQGRRSPTGPAKALL
RAIANDPQHVLQALNR

Nucleotide

• Length: 291 bp

>AT86295 NZ_CP023853:4499426-4499716 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
ACGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCCGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG

Structures

Toxin

• AlphaFold DB: S1P416