Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) unclassified/-
Location 2976286..2976934 Replicon chromosome
Accession NZ_CP023578
Organism Mycobacterium tuberculosis strain LE486

Toxin (Protein)


Gene name novel[antitoxin] Uniprot ID P9WJ12
Locus tag CP434_RS14540 Protein ID WP_003899414.1
Coordinates 2976286..2976609 (-) Length 108 a.a.

Antitoxin (Protein)


Gene name novel[toxin] Uniprot ID P9WJ10
Locus tag CP434_RS14545 Protein ID WP_003899415.1
Coordinates 2976689..2976934 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CP434_RS14520 2971862..2973123 + 1262 WP_087902221.1 IS3-like element IS987 family transposase -
CP434_RS14525 2973495..2974934 - 1440 WP_003899411.1 phage major capsid protein -
CP434_RS14530 2974942..2975475 - 534 WP_003899412.1 HK97 family phage prohead protease -
CP434_RS14535 2975628..2976119 - 492 WP_003900541.1 phage terminase small subunit P27 family -
CP434_RS14540 2976286..2976609 - 324 WP_003899414.1 type II toxin-antitoxin system toxin Toxin
CP434_RS14545 2976689..2976934 - 246 WP_003899415.1 type II toxin-antitoxin system antitoxin Antitoxin
CP434_RS14550 2976931..2978358 - 1428 WP_003899416.1 DUF3631 domain-containing protein -
CP434_RS14555 2978360..2978752 - 393 WP_003899417.1 DUF2742 domain-containing protein -
CP434_RS14560 2978749..2979009 - 261 WP_003899418.1 helix-turn-helix domain-containing protein -
CP434_RS14565 2979026..2979388 - 363 WP_003900543.1 hypothetical protein -
CP434_RS14570 2979391..2980518 - 1128 WP_003899420.1 site-specific integrase -
CP434_RS14575 2980663..2980890 - 228 WP_003899421.1 hypothetical protein -
CP434_RS14580 2980887..2981276 - 390 WP_003899422.1 hypothetical protein -
CP434_RS14585 2981182..2981454 + 273 WP_003900544.1 hypothetical protein -
CP434_RS14590 2981553..2981786 + 234 WP_003413717.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 2970253..2980518 10265


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 108 a.a.        Molecular weight: 12359.82 Da        Isoelectric Point: 8.6717

>T82014 WP_003899414.1 NZ_CP023578:c2976609-2976286 [Mycobacterium tuberculosis]
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ

Download         Length: 324 bp

>T82014 NZ_CP023578:c2976609-2976286 [Mycobacterium tuberculosis]
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 7697.71 Da        Isoelectric Point: 4.8565

>AT82014 WP_003899415.1 NZ_CP023578:c2976934-2976689 [Mycobacterium tuberculosis]
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P

Download         Length: 246 bp

>AT82014 NZ_CP023578:c2976934-2976689 [Mycobacterium tuberculosis]
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGTGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A045IHC4

Antitoxin

Source ID Structure
AlphaFold DB A0A806JR81

References