Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2756301..2756818 Replicon chromosome
Accession NZ_CP023561
Organism Staphylococcus aureus strain TF3198

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag CPC18_RS14315 Protein ID WP_000113262.1
Coordinates 2756301..2756567 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag CPC18_RS14320 Protein ID WP_000584499.1
Coordinates 2756567..2756818 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CPC18_RS14285 2751727..2752263 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
CPC18_RS14290 2752496..2753320 - 825 WP_000572040.1 formate/nitrite transporter family protein -
CPC18_RS14295 2753537..2753719 - 183 WP_000230294.1 hypothetical protein -
CPC18_RS14300 2753803..2754270 - 468 WP_000153344.1 SRPBCC domain-containing protein -
CPC18_RS14305 2754456..2756006 - 1551 WP_148121308.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
CPC18_RS14310 2756195..2756266 - 72 Protein_2657 hypothetical protein -
CPC18_RS14315 2756301..2756567 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
CPC18_RS14320 2756567..2756818 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
CPC18_RS14325 2756983..2757084 - 102 WP_001791744.1 hypothetical protein -
CPC18_RS14330 2757091..2757690 - 600 WP_000162813.1 DsbA family protein -
CPC18_RS14335 2757709..2758071 - 363 WP_000819843.1 DUF4467 domain-containing protein -
CPC18_RS14340 2758326..2759576 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
CPC18_RS14345 2759673..2760404 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
CPC18_RS14350 2760401..2761120 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T81628 WP_000113262.1 NZ_CP023561:c2756567-2756301 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T81628 NZ_CP023561:c2756567-2756301 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT81628 WP_000584499.1 NZ_CP023561:c2756818-2756567 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT81628 NZ_CP023561:c2756818-2756567 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References