Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2535013..2535530 Replicon chromosome
Accession NZ_CP023391
Organism Staphylococcus aureus strain Newman_D2C

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag CNH36_RS13535 Protein ID WP_000113262.1
Coordinates 2535013..2535279 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag CNH36_RS13540 Protein ID WP_000584499.1
Coordinates 2535279..2535530 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CNH36_RS13505 2530440..2530976 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
CNH36_RS13510 2531209..2532033 - 825 WP_000572040.1 formate/nitrite transporter family protein -
CNH36_RS13515 2532250..2532432 - 183 WP_000230294.1 hypothetical protein -
CNH36_RS13520 2532516..2532983 - 468 WP_000153344.1 SRPBCC domain-containing protein -
CNH36_RS13525 2533123..2534718 - 1596 WP_000727761.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
CNH36_RS13530 2534907..2534978 - 72 Protein_2512 hypothetical protein -
CNH36_RS13535 2535013..2535279 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
CNH36_RS13540 2535279..2535530 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
CNH36_RS13545 2535695..2535796 - 102 WP_001791744.1 hypothetical protein -
CNH36_RS13550 2535803..2536402 - 600 WP_000162813.1 DsbA family protein -
CNH36_RS13555 2536421..2536783 - 363 WP_000819843.1 DUF4467 domain-containing protein -
CNH36_RS13560 2537038..2538288 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
CNH36_RS13565 2538385..2539116 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
CNH36_RS13570 2539113..2539832 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T81197 WP_000113262.1 NZ_CP023391:c2535279-2535013 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T81197 NZ_CP023391:c2535279-2535013 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT81197 WP_000584499.1 NZ_CP023391:c2535530-2535279 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT81197 NZ_CP023391:c2535530-2535279 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References