Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 289604..290145 Replicon chromosome
Accession NZ_CP023346
Organism Escherichia coli strain ETEC-2265

Toxin (Protein)


Gene name yafQ Uniprot ID U9XPG0
Locus tag CJU64_RS01355 Protein ID WP_000615976.1
Coordinates 289604..289882 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID S1EWQ0
Locus tag CJU64_RS01360 Protein ID WP_000729704.1
Coordinates 289885..290145 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CJU64_RS01340 287186..287764 + 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -
CJU64_RS01345 287970..288737 + 768 WP_000333380.1 class II glutamine amidotransferase -
CJU64_RS01350 288708..289448 - 741 WP_001225679.1 murein L,D-transpeptidase -
CJU64_RS01355 289604..289882 - 279 WP_000615976.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
CJU64_RS01360 289885..290145 - 261 WP_000729704.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
CJU64_RS01365 290331..291104 + 774 Protein_255 C40 family peptidase -
CJU64_RS01370 291161..291517 - 357 WP_001030484.1 type II toxin-antitoxin system HicB family antitoxin -
CJU64_RS01375 291510..291788 - 279 WP_000598760.1 type II toxin-antitoxin system HicA family toxin -
CJU64_RS01380 291893..293605 - 1713 Protein_258 flagellar biosynthesis protein FlhA -
CJU64_RS01385 293577..294362 + 786 WP_000207568.1 putative lateral flagellar export/assembly protein LafU -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-84)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10800.59 Da        Isoelectric Point: 10.0702

>T80755 WP_000615976.1 NZ_CP023346:c289882-289604 [Escherichia coli]
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNALPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

>T80755 NZ_CP023346:c289882-289604 [Escherichia coli]
ATGATTCAAAGGGATATTGAATACTCGGGACAATTTTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATGCTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9391.77 Da        Isoelectric Point: 5.0758

>AT80755 WP_000729704.1 NZ_CP023346:c290145-289885 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGI

Download         Length: 261 bp

>AT80755 NZ_CP023346:c290145-289885 [Escherichia coli]
ATGGCTGCTAACGCATTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCGGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCGTTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9XPG0

Antitoxin

Source ID Structure
PDB 4ML0
AlphaFold DB A0A0E0Y6Z6

References