Detailed information of TA system TA079418

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yefM-yoeB (relBE)/Txe-RelB
• Location: 2450177..2450700
• Replicon: chromosome
• Accession: NZ_CP022607
• Organism: Staphylococcus aureus strain FORC_061

Toxin (Protein)

• Gene name: yoeB
• Uniprot ID: T1YCD0
• Locus tag: FORC61_RS12725
• Protein ID: WP_000074043.1
• Coordinates: 2450177..2450443 (-)
• Length: 89 a.a.

Antitoxin (Protein)

• Gene name: yefM
• Uniprot ID: T1YBB2
• Locus tag: FORC61_RS12730
• Protein ID: WP_000587618.1
• Coordinates: 2450443..2450700 (-)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FORC61_RS12705	2445483..2446670	-	1188	WP_114967500.1	MFS transporter	-
FORC61_RS12710	2447066..2447842	-	777	WP_000072147.1	iron export ABC transporter permease subunit FetB	-
FORC61_RS12715	2447835..2448497	-	663	WP_000923524.1	ATP-binding cassette domain-containing protein	-
FORC61_RS12720	2448745..2449821	-	1077	WP_001076665.1	M42 family metallopeptidase	-
FORC61_RS12725	2450177..2450443	-	267	WP_000074043.1	Txe/YoeB family addiction module toxin	Toxin
FORC61_RS12730	2450443..2450700	-	258	WP_000587618.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
FORC61_RS12740	2451060..2451515	+	456	WP_000732082.1	DUF1307 domain-containing protein	-
FORC61_RS12745	2451683..2453260	-	1578	WP_000143508.1	FMN-binding glutamate synthase family protein	-
FORC61_RS12750	2453455..2454204	+	750	WP_000072441.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin YoeB (4-87)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-68)

Sequences

Toxin

Protein

• Length: 89 a.a.
• Molecular weight: 10657.45 Da
• Isoelectric Point: 10.3584

>T79418 WP_000074043.1 NZ_CP022607:c2450443-2450177 [Staphylococcus aureus]
MSNYTVKIKNSAKLDLKKIKHPYLKKTFIEIVETLKNNPYKITQSFEKLEPKYLERYSRRINLQHRVVYTIDDRNKVVLI
LSAWSHYD

Nucleotide

• Length: 267 bp

>T79418 NZ_CP022607:c2450443-2450177 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCGGCGAAGTTAGATTTAAAGAAAATAAAACATCCTTATTTAAAGAAGAC
ATTTATAGAAATTGTTGAGACTTTAAAAAATAATCCTTATAAAATAACACAATCCTTTGAAAAATTAGAACCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCTTCAGCACAGGGTCGTCTATACCATAGATGATCGAAATAAAGTAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9762.78 Da
• Isoelectric Point: 4.1958

>AT79418 WP_000587618.1 NZ_CP022607:c2450700-2450443 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETMYLVSTGTMDKVREREKDNSGTTNIDDI
DWDNL

Nucleotide

• Length: 258 bp

>AT79418 NZ_CP022607:c2450700-2450443 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGTAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATGT
ATCTTGTATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Structures

Toxin

• AlphaFold DB: T1YCD0

Antitoxin

• AlphaFold DB: T1YBB2