Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 11773..12290 | Replicon | plasmid pAMT1 |
Accession | NZ_CP022249 | ||
Organism | Staphylococcus epidermidis strain AMT |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | - |
Locus tag | CFE88_RS12385 | Protein ID | WP_002477879.1 |
Coordinates | 11773..12039 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | CFE88_RS12390 | Protein ID | WP_002477880.1 |
Coordinates | 12039..12290 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CFE88_RS12365 | 7075..7662 | - | 588 | WP_088922898.1 | hypothetical protein | - |
CFE88_RS12370 | 9298..9885 | + | 588 | WP_088922898.1 | hypothetical protein | - |
CFE88_RS12375 | 10227..10760 | + | 534 | WP_002477877.1 | DUF536 domain-containing protein | - |
CFE88_RS12380 | 10760..11533 | + | 774 | WP_088922897.1 | hypothetical protein | - |
CFE88_RS12385 | 11773..12039 | - | 267 | WP_002477879.1 | Txe/YoeB family addiction module toxin | Toxin |
CFE88_RS12390 | 12039..12290 | - | 252 | WP_002477880.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
CFE88_RS12395 | 12308..12514 | - | 207 | WP_002477881.1 | hypothetical protein | - |
CFE88_RS12400 | 12766..13311 | + | 546 | WP_088922896.1 | hypothetical protein | - |
CFE88_RS12405 | 13660..13908 | + | 249 | WP_088922895.1 | AbrB family transcriptional regulator | - |
CFE88_RS12410 | 13905..14243 | + | 339 | WP_058703189.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
CFE88_RS12415 | 14777..15154 | + | 378 | WP_088922894.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..37770 | 37770 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10457.07 Da Isoelectric Point: 10.2782
>T78733 WP_002477879.1 NZ_CP022249:c12039-11773 [Staphylococcus epidermidis]
MAKLNITFSPQAFEDYKYFQKNDRKLLKRINDLLKSISRDGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDEHHIK
IASCKYHY
MAKLNITFSPQAFEDYKYFQKNDRKLLKRINDLLKSISRDGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDEHHIK
IASCKYHY
Download Length: 267 bp
>T78733 NZ_CP022249:c12039-11773 [Staphylococcus epidermidis]
ATGGCAAAGTTGAATATTACGTTCTCCCCTCAAGCATTCGAGGATTATAAGTATTTTCAAAAGAACGATAGAAAATTACT
AAAGAGAATTAATGATTTGCTTAAAAGTATCAGTCGAGATGGCGCTCTAAAAGGAATCGGGAAACCTGAAAAGTTGAAGT
CTAATCTTACCGGTTATTACAGTCGACGTATCAATCATGAGCATAGATTAGTTTATACAGTTGATGAACATCATATAAAG
ATAGCTTCATGTAAATATCATTATTAA
ATGGCAAAGTTGAATATTACGTTCTCCCCTCAAGCATTCGAGGATTATAAGTATTTTCAAAAGAACGATAGAAAATTACT
AAAGAGAATTAATGATTTGCTTAAAAGTATCAGTCGAGATGGCGCTCTAAAAGGAATCGGGAAACCTGAAAAGTTGAAGT
CTAATCTTACCGGTTATTACAGTCGACGTATCAATCATGAGCATAGATTAGTTTATACAGTTGATGAACATCATATAAAG
ATAGCTTCATGTAAATATCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9367.52 Da Isoelectric Point: 4.4455
>AT78733 WP_002477880.1 NZ_CP022249:c12290-12039 [Staphylococcus epidermidis]
MLVKNYSNARQNLKALMKQVNNDSDVVTVTSTDNKNVVMMAESDYNAMMETLYLQQNPNNAEHLAQSIADLERGNTMTKE
IDV
MLVKNYSNARQNLKALMKQVNNDSDVVTVTSTDNKNVVMMAESDYNAMMETLYLQQNPNNAEHLAQSIADLERGNTMTKE
IDV
Download Length: 252 bp
>AT78733 NZ_CP022249:c12290-12039 [Staphylococcus epidermidis]
ATGTTAGTTAAAAACTACTCAAACGCACGCCAAAATTTAAAAGCGTTGATGAAACAGGTAAATAATGATAGTGATGTAGT
CACAGTCACGTCGACTGATAATAAAAATGTAGTGATGATGGCTGAATCTGATTACAACGCAATGATGGAAACACTTTATT
TACAACAAAATCCCAATAACGCTGAACATCTGGCTCAATCAATTGCAGATTTAGAACGTGGCAACACAATGACGAAAGAA
ATTGATGTGTAA
ATGTTAGTTAAAAACTACTCAAACGCACGCCAAAATTTAAAAGCGTTGATGAAACAGGTAAATAATGATAGTGATGTAGT
CACAGTCACGTCGACTGATAATAAAAATGTAGTGATGATGGCTGAATCTGATTACAACGCAATGATGGAAACACTTTATT
TACAACAAAATCCCAATAACGCTGAACATCTGGCTCAATCAATTGCAGATTTAGAACGTGGCAACACAATGACGAAAGAA
ATTGATGTGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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