Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 3554709..3555379 Replicon chromosome
Accession NZ_CP022014
Organism Mycobacterium tuberculosis strain MTB2

Toxin (Protein)


Gene name higB Uniprot ID O53332
Locus tag B7R63_RS17410 Protein ID WP_003899954.1
Coordinates 3554709..3555053 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID G0THF6
Locus tag B7R63_RS17415 Protein ID WP_003899955.1
Coordinates 3555050..3555379 (+) Length 110 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B7R63_RS17375 3549782..3550642 + 861 WP_003416628.1 alpha/beta hydrolase -
B7R63_RS17380 3550617..3551132 + 516 WP_003899950.1 nitroreductase family deazaflavin-dependent oxidoreductase -
B7R63_RS17390 3551372..3551665 + 294 WP_003416635.1 hypothetical protein -
B7R63_RS17395 3551953..3553242 + 1290 WP_003416640.1 ATP-binding protein -
B7R63_RS17400 3553589..3554023 - 435 WP_003899952.1 type II toxin-antitoxin system VapC family toxin -
B7R63_RS17405 3554026..3554478 - 453 WP_003899953.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
B7R63_RS17410 3554709..3555053 + 345 WP_003899954.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
B7R63_RS17415 3555050..3555379 + 330 WP_003899955.1 XRE family transcriptional regulator Antitoxin
B7R63_RS17420 3555917..3556264 + 348 WP_003899956.1 DUF2384 domain-containing protein -
B7R63_RS17425 3556261..3556881 + 621 WP_003899957.1 RES family NAD+ phosphorylase -
B7R63_RS17435 3558400..3559665 - 1266 WP_003902423.1 hypothetical protein -
B7R63_RS17440 3559833..3560042 + 210 WP_003416778.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-103)

Antitoxin

Cro/C1-type helix-turn-helix domain

(38-91)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 12692.50 Da        Isoelectric Point: 5.6920

>T78171 WP_003899954.1 NZ_CP022014:3554709-3555053 [Mycobacterium tuberculosis]
MAVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGTSIRILFAFDPARQAILLL
GGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG

Download         Length: 345 bp

>T78171 NZ_CP022014:3554709-3555053 [Mycobacterium tuberculosis]
TTGGCCGTGATCCTGCTCCCGCAGGTCGAACGGTGGTTCTTCGCGCTCAACAGGGATGCGATGGCCTCGGTCACCGGCGC
CATCGACCTGCTCGAAATGGAGGGGCCGACGTTGGGCCGCCCGGTGGTCGACAAAGTGAACGACTCAACGTTTCACAACA
TGAAGGAGCTGCGCCCCGCCGGCACCAGCATCCGGATCCTGTTCGCCTTCGACCCGGCCCGGCAGGCGATCCTGCTGCTG
GGCGGTGACAAGGCAGGCAACTGGAAACGCTGGTACGACAACAACATTCCAATCGCTGACCAGCGCTCCGAGAACTGGCT
GGCGAGCGAGCACGGAGGTGGATGA

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 11802.46 Da        Isoelectric Point: 7.4051

>AT78171 WP_003899955.1 NZ_CP022014:3555050-3555379 [Mycobacterium tuberculosis]
MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTEL
GTLQAYVAALGGHLRIVAEFGENTVELTA

Download         Length: 330 bp

>AT78171 NZ_CP022014:3555050-3555379 [Mycobacterium tuberculosis]
ATGACCATGGCCCGCAACTGGCGTGACATTCGCGCCGATGCCGTCGCGCAGGGCCGCGTGGATCTGCAGCGGGCGGCCGT
GGCACGCGAGGAGATGCGCGATGCCGTCCTGGCGCACCGCCTGGCCGAGATCCGCAAGGCGCTAGGCCACGCACGTCAGG
CCGACGTCGCGGCGCTGATGGGGGTCTCTCAGGCCCGTGTCTCCAAGCTGGAGAGCGGCGACCTGTCCCACACCGAACTC
GGCACCCTGCAGGCCTACGTTGCCGCCCTGGGCGGGCACCTGCGCATCGTCGCTGAGTTCGGCGAAAATACTGTCGAGCT
GACCGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4FBK2

Antitoxin

Source ID Structure
PDB 6LTY
PDB 6LTZ
AlphaFold DB G0THF6

References