77383

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 6201880..6202475 Replicon chromosome
Accession NZ_CP021775
Organism Pseudomonas aeruginosa strain Pa58

Toxin (Protein)


Gene name higB Uniprot ID V6ALY3
Locus tag CDL16_RS30235 Protein ID WP_003113526.1
Coordinates 6202197..6202475 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag CDL16_RS30230 Protein ID WP_003133769.1
Coordinates 6201880..6202185 (-) Length 102 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CDL16_RS30200 6196903..6197193 - 291 WP_031757220.1 DUF5447 family protein -
CDL16_RS30205 6197369..6197641 - 273 WP_004352675.1 hypothetical protein -
CDL16_RS30215 6198081..6198416 + 336 WP_023094905.1 hypothetical protein -
CDL16_RS35455 6198510..6199100 + 591 WP_071536478.1 SLATT domain-containing protein -
CDL16_RS30220 6199097..6200362 + 1266 WP_023094906.1 nucleotidyltransferase -
CDL16_RS30225 6200446..6201438 - 993 WP_003133766.1 hypothetical protein -
CDL16_RS30230 6201880..6202185 - 306 WP_003133769.1 HigA family addiction module antidote protein Antitoxin
CDL16_RS30235 6202197..6202475 - 279 WP_003113526.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CDL16_RS30245 6202804..6205032 + 2229 WP_003133778.1 TonB-dependent receptor -
CDL16_RS30250 6205103..6205750 - 648 WP_003095021.1 carbonate dehydratase -
CDL16_RS30255 6205812..6207050 - 1239 WP_003095023.1 C69 family dipeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(5-92)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(6-82)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10646.19 Da        Isoelectric Point: 7.8937

>T77383 WP_003113526.1 NZ_CP021775:c6202475-6202197 [Pseudomonas aeruginosa]
MILTFRCDETRQLFETGLSRRWGAILTVATRKLAMLHAATELRDLRSPPGNRLEPLQGKRAGQHSIRINDQWRVCFVWTD
AGPEEVEIVDYH

Download         Length: 279 bp

>T77383 NZ_CP021775:c6202475-6202197 [Pseudomonas aeruginosa]
ATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGGTCTTTCGAGGCGGTGGGGAGCGATCCTCAC
AGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACTTGCGCTCTCCACCTGGAAACCGGTTGG
AGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGAT
GCGGGTCCCGAAGAAGTCGAAATAGTTGATTACCACTGA

Antitoxin


Download         Length: 102 a.a.        Molecular weight: 11214.73 Da        Isoelectric Point: 4.6081

>AT77383 WP_003133769.1 NZ_CP021775:c6202185-6201880 [Pseudomonas aeruginosa]
MATNGMRPIHPGEILRDEFLMELDISPAALARALKVSAPTVNDIVREQRGISADMAIRLGRYFDTSAQFWMNLQSEYSLA
TAYAANGEQIEHEIEPLLAHG

Download         Length: 306 bp

>AT77383 NZ_CP021775:c6202185-6201880 [Pseudomonas aeruginosa]
ATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTACGCGATGAGTTTCTGATGGAGTTGGATATCTCTCC
AGCTGCCCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAGTGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG
ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTACTCGTTAGCA
ACTGCTTATGCGGCGAATGGCGAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCACGGATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB V6ALY3

Antitoxin

Source ID Structure

References