Detailed information of TA system TA077194

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yafN-yafO (relBE)/YafO-YafN
• Location: 1580076..1580770
• Replicon: chromosome
• Accession: NZ_CP021732
• Organism: Escherichia coli strain AR_0114

Toxin (Protein)

• Gene name: yafO
• Uniprot ID: Q47157
• Locus tag: AM361_RS08310
• Protein ID: WP_001263489.1
• Coordinates: 1580076..1580474 (-)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: yafN
• Uniprot ID: S1QAE3
• Locus tag: AM361_RS08315
• Protein ID: WP_000554758.1
• Coordinates: 1580477..1580770 (-)
• Length: 98 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
-	1575664..1575744	-	81	NuclAT_12	-	-
-	1575664..1575744	-	81	NuclAT_12	-	-
-	1575664..1575744	-	81	NuclAT_12	-	-
-	1575664..1575744	-	81	NuclAT_12	-	-
AM361_RS08280	1576340..1576798	-	459	WP_001291990.1	xanthine phosphoribosyltransferase	-
AM361_RS08285	1577059..1578516	+	1458	WP_001292994.1	cytosol nonspecific dipeptidase	-
AM361_RS08290	1578573..1579094	-	522	Protein_1504	peptide chain release factor H	-
AM361_RS08295	1579090..1579296	-	207	Protein_1505	RtcB family protein	-
AM361_RS08305	1579614..1580066	-	453	WP_001059892.1	GNAT family N-acetyltransferase	-
AM361_RS08310	1580076..1580474	-	399	WP_001263489.1	type II toxin-antitoxin system mRNA interferase toxin YafO	Toxin
AM361_RS08315	1580477..1580770	-	294	WP_000554758.1	type I toxin-antitoxin system antitoxin YafN	Antitoxin
AM361_RS08320	1580822..1581877	-	1056	WP_001226164.1	DNA polymerase IV	-
AM361_RS08325	1581948..1582733	-	786	WP_000207552.1	putative lateral flagellar export/assembly protein LafU	-
AM361_RS08330	1582705..1584417	+	1713	Protein_1511	flagellar biosynthesis protein FlhA	-
AM361_RS08335	1584641..1585138	-	498	WP_000006255.1	REP-associated tyrosine transposase RayT	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	-	gmhA/lpcA	1580076..1595356	15280

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase toxin YafO (27-130)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 15487.84 Da
• Isoelectric Point: 7.4215

>T77194 WP_001263489.1 NZ_CP021732:c1580474-1580076 [Escherichia coli]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Nucleotide

• Length: 399 bp

>T77194 NZ_CP021732:c1580474-1580076 [Escherichia coli]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGATGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACGACTCCTTTACCTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGAGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGAAGCGCATTTGGTATATTGTCAGGGGGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACTGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin

Protein

• Length: 98 a.a.
• Molecular weight: 11233.76 Da
• Isoelectric Point: 5.2170

>AT77194 WP_000554758.1 NZ_CP021732:c1580770-1580477 [Escherichia coli]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EQYLNDMTDDDFNDFKE

Nucleotide

• Length: 294 bp

>AT77194 NZ_CP021732:c1580770-1580477 [Escherichia coli]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
GGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTG
CTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCT
GAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Structures

Toxin

• AlphaFold DB: A0A090J8B1

Antitoxin

• AlphaFold DB: S1QAE3