Detailed information of TA system TA076196

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yefM-yoeB (relBE)/YoeB-YefM
• Location: 2467497..2467999
• Replicon: chromosome
• Accession: NZ_CP021179
• Organism: Escherichia coli strain 81009

Toxin (Protein)

• Gene name: yoeB
• Uniprot ID: E2QNP2
• Locus tag: DNNLJILF_RS12230
• Protein ID: WP_000767819.1
• Coordinates: 2467745..2467999 (+)
• Length: 85 a.a.

Antitoxin (Protein)

• Gene name: yefM
• Uniprot ID: E2QNP3
• Locus tag: DNNLJILF_RS12225
• Protein ID: WP_001259253.1
• Coordinates: 2467497..2467748 (+)
• Length: 84 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
DNNLJILF_RS12195	2462675..2463742	-	1068	WP_000080057.1	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	-
DNNLJILF_RS12200	2463742..2464812	-	1071	WP_000108967.1	histidinol-phosphate transaminase	-
DNNLJILF_RS12205	2464809..2466113	-	1305	WP_001296211.1	histidinol dehydrogenase	-
DNNLJILF_RS12210	2466119..2467018	-	900	WP_000131782.1	ATP phosphoribosyltransferase	-
DNNLJILF_RS12220	2467164..2467214	-	51	WP_001364200.1	his operon leader peptide	-
DNNLJILF_RS12225	2467497..2467748	+	252	WP_001259253.1	YoeB-YefM toxin-antitoxin system antitoxin YefM	Antitoxin
DNNLJILF_RS12230	2467745..2467999	+	255	WP_000767819.1	type II toxin-antitoxin system mRNA interferase toxin YoeB	Toxin
DNNLJILF_RS12235	2468082..2468906	+	825	WP_000754737.1	SDR family oxidoreductase	-
DNNLJILF_RS12240	2468952..2469881	+	930	WP_000803366.1	LysR family transcriptional regulator	-
DNNLJILF_RS27030	2470096..2470158	+	63	WP_010723108.1	membrane protein YoeI	-
DNNLJILF_RS12245	2470148..2471506	+	1359	WP_000019194.1	putrescine/proton symporter PlaP	-
DNNLJILF_RS12255	2471723..2472181	+	459	WP_001531805.1	IS200/IS605-like element IS200C family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	flank	IS/Tn	-	-	2471723..2472181	458

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin YoeB (2-84)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-72)

Sequences

Toxin

Protein

• Length: 85 a.a.
• Molecular weight: 10110.53 Da
• Isoelectric Point: 7.2749

>T76196 WP_000767819.1 NZ_CP021179:2467745-2467999 [Escherichia coli]
VKLIWSEESWDDYLYWQEADKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHLLVYAVTDDSLLIAAC
RYHY

Nucleotide

• Length: 255 bp

>T76196 NZ_CP021179:2467745-2467999 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAGCAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACACCATTTGAAGGTAAGGGGAAACCAGAACCCCTGAAACATAACTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCTTCTGGTATACGCGGTTACTGATGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA

Antitoxin

Protein

• Length: 84 a.a.
• Molecular weight: 9365.62 Da
• Isoelectric Point: 4.6127

>AT76196 WP_001259253.1 NZ_CP021179:2467497-2467748 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSDKGTEKD
IIE

Nucleotide

• Length: 252 bp

>AT76196 NZ_CP021179:2467497-2467748 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTCATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGACAAAGGAACGGAAAAGGAC
ATTATTGAGTGA

Structures

Toxin

• AlphaFold DB: E2QNP2

Antitoxin

• AlphaFold DB: E2QNP3