Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 4757176..4757780 Replicon chromosome
Accession NZ_CP021015
Organism Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6991

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag XcfCFBP6991P_RS21405 Protein ID WP_099802820.1
Coordinates 4757176..4757490 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag XcfCFBP6991P_RS21410 Protein ID WP_099802819.1
Coordinates 4757490..4757780 (+) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XcfCFBP6991P_RS21340 4752220..4752528 - 309 WP_145958289.1 helix-turn-helix domain-containing protein -
XcfCFBP6991P_RS21345 4752646..4752900 - 255 WP_145958288.1 hypothetical protein -
XcfCFBP6991P_RS21350 4752897..4753223 - 327 WP_145958287.1 hypothetical protein -
XcfCFBP6991P_RS21355 4753220..4753501 - 282 WP_099801972.1 hypothetical protein -
XcfCFBP6991P_RS21360 4753737..4754096 - 360 WP_099863717.1 helix-turn-helix domain-containing protein -
XcfCFBP6991P_RS21365 4754228..4754575 - 348 WP_099801970.1 hypothetical protein -
XcfCFBP6991P_RS21370 4754568..4754834 - 267 WP_099801969.1 hypothetical protein -
XcfCFBP6991P_RS21375 4754831..4755010 - 180 WP_099801968.1 hypothetical protein -
XcfCFBP6991P_RS21380 4755007..4755210 - 204 WP_099801967.1 hypothetical protein -
XcfCFBP6991P_RS21385 4755207..4755548 - 342 WP_099801966.1 hypothetical protein -
XcfCFBP6991P_RS21390 4755632..4755829 - 198 WP_099801965.1 hypothetical protein -
XcfCFBP6991P_RS24770 4755826..4756017 - 192 WP_193588907.1 helix-turn-helix domain-containing protein -
XcfCFBP6991P_RS21400 4756094..4756723 + 630 WP_145958286.1 hypothetical protein -
XcfCFBP6991P_RS21405 4757176..4757490 + 315 WP_099802820.1 hypothetical protein Toxin
XcfCFBP6991P_RS21410 4757490..4757780 + 291 WP_099802819.1 helix-turn-helix domain-containing protein Antitoxin
XcfCFBP6991P_RS21415 4757772..4759001 - 1230 WP_158526043.1 site-specific integrase -
XcfCFBP6991P_RS21420 4759867..4760109 + 243 WP_022559483.1 hypothetical protein -
XcfCFBP6991P_RS21425 4760146..4761819 + 1674 WP_089095178.1 type IV secretory system conjugative DNA transfer family protein -
XcfCFBP6991P_RS21430 4762153..4762563 + 411 WP_005914237.1 TcpQ domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4738031..4775655 37624


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-87)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11650.49 Da        Isoelectric Point: 9.3988

>T75894 WP_099802820.1 NZ_CP021015:4757176-4757490 [Xanthomonas citri pv. phaseoli var. fuscans]
MIFVETPIFTASVTELLTDEQYGAFQSFLIAEPRAGDVIEQTGGLRKVRWSVAGKGKRGGVRVIYYFVDEADQIRLLLIY
KKGVQDDLTPSQKKVLKAIKDGWA

Download         Length: 315 bp

>T75894 NZ_CP021015:4757176-4757490 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGATCTTCGTCGAGACCCCCATCTTCACTGCCTCGGTGACAGAGCTTTTGACCGATGAGCAGTACGGGGCGTTTCAGTC
ATTCCTGATCGCGGAGCCGCGCGCCGGCGACGTCATCGAGCAGACGGGCGGCCTGCGTAAGGTGCGCTGGTCTGTAGCGG
GGAAGGGCAAGCGCGGCGGGGTCAGGGTTATCTACTACTTCGTGGATGAGGCCGATCAGATCCGGCTGCTGCTGATCTAC
AAAAAGGGCGTGCAGGACGACCTGACGCCGTCCCAGAAGAAAGTGCTGAAAGCAATCAAAGACGGGTGGGCATGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10638.24 Da        Isoelectric Point: 10.7495

>AT75894 WP_099802819.1 NZ_CP021015:4757490-4757780 [Xanthomonas citri pv. phaseoli var. fuscans]
MDKNLFAQLAESMEQMGEITRGERAPSREIHIDAVRVKEVRAATGLSQAKFAQVIDVQLGTLRNWEQGRRNPTGPARALL
RAIKKDPKSVLEALSA

Download         Length: 291 bp

>AT75894 NZ_CP021015:4757490-4757780 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGGACAAGAATCTCTTCGCACAACTCGCCGAGAGCATGGAACAGATGGGCGAGATCACTCGCGGCGAACGGGCTCCGTC
TCGCGAGATCCACATCGATGCCGTGCGGGTGAAAGAGGTCCGGGCCGCCACTGGGCTGTCACAGGCGAAATTCGCTCAGG
TGATCGACGTGCAGCTCGGCACCTTGCGTAATTGGGAGCAGGGGCGGCGGAACCCTACGGGGCCTGCCCGAGCGCTGCTG
CGTGCGATCAAGAAGGATCCCAAGAGCGTGCTGGAAGCTCTGTCAGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References