Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 2859323..2859927 Replicon chromosome
Accession NZ_CP020983
Organism Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6990

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag XcfCFBP6990P_RS13105 Protein ID WP_099802820.1
Coordinates 2859613..2859927 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag XcfCFBP6990P_RS13100 Protein ID WP_099802819.1
Coordinates 2859323..2859613 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XcfCFBP6990P_RS13080 2854540..2854950 - 411 WP_005914237.1 TcpQ domain-containing protein -
XcfCFBP6990P_RS13085 2855284..2856957 - 1674 WP_089095178.1 type IV secretory system conjugative DNA transfer family protein -
XcfCFBP6990P_RS13090 2856994..2857236 - 243 WP_022559483.1 hypothetical protein -
XcfCFBP6990P_RS13095 2858102..2859331 + 1230 WP_158526043.1 site-specific integrase -
XcfCFBP6990P_RS13100 2859323..2859613 - 291 WP_099802819.1 helix-turn-helix domain-containing protein Antitoxin
XcfCFBP6990P_RS13105 2859613..2859927 - 315 WP_099802820.1 hypothetical protein Toxin
XcfCFBP6990P_RS13110 2860380..2861009 - 630 WP_145958286.1 hypothetical protein -
XcfCFBP6990P_RS23965 2861086..2861277 + 192 WP_193588907.1 helix-turn-helix domain-containing protein -
XcfCFBP6990P_RS13120 2861274..2861471 + 198 WP_099801965.1 hypothetical protein -
XcfCFBP6990P_RS13125 2861555..2861896 + 342 WP_099801966.1 hypothetical protein -
XcfCFBP6990P_RS13130 2861893..2862096 + 204 WP_099801967.1 hypothetical protein -
XcfCFBP6990P_RS13135 2862093..2862272 + 180 WP_099801968.1 hypothetical protein -
XcfCFBP6990P_RS13140 2862269..2862535 + 267 WP_099801969.1 hypothetical protein -
XcfCFBP6990P_RS13145 2862528..2862875 + 348 WP_099801970.1 hypothetical protein -
XcfCFBP6990P_RS13150 2863007..2863366 + 360 WP_099863717.1 helix-turn-helix domain-containing protein -
XcfCFBP6990P_RS13155 2863602..2863883 + 282 WP_099801972.1 hypothetical protein -
XcfCFBP6990P_RS13160 2863880..2864206 + 327 WP_145958287.1 hypothetical protein -
XcfCFBP6990P_RS13165 2864203..2864457 + 255 WP_145958288.1 hypothetical protein -
XcfCFBP6990P_RS13170 2864575..2864883 + 309 WP_145958289.1 helix-turn-helix domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2842856..2879557 36701


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-87)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11650.49 Da        Isoelectric Point: 9.3988

>T75859 WP_099802820.1 NZ_CP020983:c2859927-2859613 [Xanthomonas citri pv. phaseoli var. fuscans]
MIFVETPIFTASVTELLTDEQYGAFQSFLIAEPRAGDVIEQTGGLRKVRWSVAGKGKRGGVRVIYYFVDEADQIRLLLIY
KKGVQDDLTPSQKKVLKAIKDGWA

Download         Length: 315 bp

>T75859 NZ_CP020983:c2859927-2859613 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGATCTTCGTCGAGACCCCCATCTTCACTGCCTCGGTGACAGAGCTTTTGACCGATGAGCAGTACGGGGCGTTTCAGTC
ATTCCTGATCGCGGAGCCGCGCGCCGGCGACGTCATCGAGCAGACGGGCGGCCTGCGTAAGGTGCGCTGGTCTGTAGCGG
GGAAGGGCAAGCGCGGCGGGGTCAGGGTTATCTACTACTTCGTGGATGAGGCCGATCAGATCCGGCTGCTGCTGATCTAC
AAAAAGGGCGTGCAGGACGACCTGACGCCGTCCCAGAAGAAAGTGCTGAAAGCAATCAAAGACGGGTGGGCATGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10638.24 Da        Isoelectric Point: 10.7495

>AT75859 WP_099802819.1 NZ_CP020983:c2859613-2859323 [Xanthomonas citri pv. phaseoli var. fuscans]
MDKNLFAQLAESMEQMGEITRGERAPSREIHIDAVRVKEVRAATGLSQAKFAQVIDVQLGTLRNWEQGRRNPTGPARALL
RAIKKDPKSVLEALSA

Download         Length: 291 bp

>AT75859 NZ_CP020983:c2859613-2859323 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGGACAAGAATCTCTTCGCACAACTCGCCGAGAGCATGGAACAGATGGGCGAGATCACTCGCGGCGAACGGGCTCCGTC
TCGCGAGATCCACATCGATGCCGTGCGGGTGAAAGAGGTCCGGGCCGCCACTGGGCTGTCACAGGCGAAATTCGCTCAGG
TGATCGACGTGCAGCTCGGCACCTTGCGTAATTGGGAGCAGGGGCGGCGGAACCCTACGGGGCCTGCCCGAGCGCTGCTG
CGTGCGATCAAGAAGGATCCCAAGAGCGTGCTGGAAGCTCTGTCAGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References