Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 1005001..1005605 Replicon chromosome
Accession NZ_CP020981
Organism Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6989

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag XcfCFBP6989P_RS04350 Protein ID WP_099802820.1
Coordinates 1005001..1005315 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag XcfCFBP6989P_RS04355 Protein ID WP_099802819.1
Coordinates 1005315..1005605 (+) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XcfCFBP6989P_RS04285 1000045..1000353 - 309 WP_145958289.1 helix-turn-helix domain-containing protein -
XcfCFBP6989P_RS04290 1000471..1000701 - 231 WP_145958381.1 hypothetical protein -
XcfCFBP6989P_RS04295 1000722..1001048 - 327 WP_145958287.1 hypothetical protein -
XcfCFBP6989P_RS04300 1001045..1001326 - 282 WP_099801972.1 hypothetical protein -
XcfCFBP6989P_RS04305 1001562..1001921 - 360 WP_099863717.1 helix-turn-helix domain-containing protein -
XcfCFBP6989P_RS04310 1002053..1002400 - 348 WP_099801970.1 hypothetical protein -
XcfCFBP6989P_RS04315 1002393..1002659 - 267 WP_099801969.1 hypothetical protein -
XcfCFBP6989P_RS04320 1002656..1002835 - 180 WP_099801968.1 hypothetical protein -
XcfCFBP6989P_RS04325 1002832..1003035 - 204 WP_099801967.1 hypothetical protein -
XcfCFBP6989P_RS04330 1003032..1003373 - 342 WP_099801966.1 hypothetical protein -
XcfCFBP6989P_RS04335 1003457..1003654 - 198 WP_099801965.1 hypothetical protein -
XcfCFBP6989P_RS23885 1003651..1003842 - 192 WP_193588907.1 helix-turn-helix domain-containing protein -
XcfCFBP6989P_RS04345 1003919..1004548 + 630 WP_145958286.1 hypothetical protein -
XcfCFBP6989P_RS04350 1005001..1005315 + 315 WP_099802820.1 hypothetical protein Toxin
XcfCFBP6989P_RS04355 1005315..1005605 + 291 WP_099802819.1 helix-turn-helix domain-containing protein Antitoxin
XcfCFBP6989P_RS04360 1005597..1006826 - 1230 WP_158526043.1 site-specific integrase -
XcfCFBP6989P_RS04365 1007692..1007934 + 243 WP_022559483.1 hypothetical protein -
XcfCFBP6989P_RS04370 1007971..1009644 + 1674 WP_089095178.1 type IV secretory system conjugative DNA transfer family protein -
XcfCFBP6989P_RS04375 1009978..1010388 + 411 WP_005914237.1 TcpQ domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 985856..1023480 37624


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-87)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11650.49 Da        Isoelectric Point: 9.3988

>T75855 WP_099802820.1 NZ_CP020981:1005001-1005315 [Xanthomonas citri pv. phaseoli var. fuscans]
MIFVETPIFTASVTELLTDEQYGAFQSFLIAEPRAGDVIEQTGGLRKVRWSVAGKGKRGGVRVIYYFVDEADQIRLLLIY
KKGVQDDLTPSQKKVLKAIKDGWA

Download         Length: 315 bp

>T75855 NZ_CP020981:1005001-1005315 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGATCTTCGTCGAGACCCCCATCTTCACTGCCTCGGTGACAGAGCTTTTGACCGATGAGCAGTACGGGGCGTTTCAGTC
ATTCCTGATCGCGGAGCCGCGCGCCGGCGACGTCATCGAGCAGACGGGCGGCCTGCGTAAGGTGCGCTGGTCTGTAGCGG
GGAAGGGCAAGCGCGGCGGGGTCAGGGTTATCTACTACTTCGTGGATGAGGCCGATCAGATCCGGCTGCTGCTGATCTAC
AAAAAGGGCGTGCAGGACGACCTGACGCCGTCCCAGAAGAAAGTGCTGAAAGCAATCAAAGACGGGTGGGCATGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10638.24 Da        Isoelectric Point: 10.7495

>AT75855 WP_099802819.1 NZ_CP020981:1005315-1005605 [Xanthomonas citri pv. phaseoli var. fuscans]
MDKNLFAQLAESMEQMGEITRGERAPSREIHIDAVRVKEVRAATGLSQAKFAQVIDVQLGTLRNWEQGRRNPTGPARALL
RAIKKDPKSVLEALSA

Download         Length: 291 bp

>AT75855 NZ_CP020981:1005315-1005605 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGGACAAGAATCTCTTCGCACAACTCGCCGAGAGCATGGAACAGATGGGCGAGATCACTCGCGGCGAACGGGCTCCGTC
TCGCGAGATCCACATCGATGCCGTGCGGGTGAAAGAGGTCCGGGCCGCCACTGGGCTGTCACAGGCGAAATTCGCTCAGG
TGATCGACGTGCAGCTCGGCACCTTGCGTAATTGGGAGCAGGGGCGGCGGAACCCTACGGGGCCTGCCCGAGCGCTGCTG
CGTGCGATCAAGAAGGATCCCAAGAGCGTGCTGGAAGCTCTGTCAGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References