Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 3598168..3598772 Replicon chromosome
Accession NZ_CP020979
Organism Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6988R

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag XcfCFBP6988P_RS16265 Protein ID WP_099802820.1
Coordinates 3598458..3598772 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag XcfCFBP6988P_RS16260 Protein ID WP_099802819.1
Coordinates 3598168..3598458 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XcfCFBP6988P_RS16240 3593385..3593795 - 411 WP_005914237.1 TcpQ domain-containing protein -
XcfCFBP6988P_RS16245 3594129..3595802 - 1674 WP_089095178.1 type IV secretory system conjugative DNA transfer family protein -
XcfCFBP6988P_RS16250 3595839..3596081 - 243 WP_022559483.1 hypothetical protein -
XcfCFBP6988P_RS16255 3596947..3598176 + 1230 WP_158526043.1 site-specific integrase -
XcfCFBP6988P_RS16260 3598168..3598458 - 291 WP_099802819.1 helix-turn-helix domain-containing protein Antitoxin
XcfCFBP6988P_RS16265 3598458..3598772 - 315 WP_099802820.1 hypothetical protein Toxin
XcfCFBP6988P_RS16270 3599225..3599854 - 630 WP_145958286.1 hypothetical protein -
XcfCFBP6988P_RS24005 3599931..3600122 + 192 WP_193588907.1 helix-turn-helix domain-containing protein -
XcfCFBP6988P_RS16280 3600119..3600316 + 198 WP_099801965.1 hypothetical protein -
XcfCFBP6988P_RS16285 3600400..3600741 + 342 WP_099801966.1 hypothetical protein -
XcfCFBP6988P_RS16290 3600738..3600941 + 204 WP_099801967.1 hypothetical protein -
XcfCFBP6988P_RS16295 3600938..3601117 + 180 WP_099801968.1 hypothetical protein -
XcfCFBP6988P_RS16300 3601114..3601380 + 267 WP_099801969.1 hypothetical protein -
XcfCFBP6988P_RS16305 3601373..3601720 + 348 WP_099801970.1 hypothetical protein -
XcfCFBP6988P_RS16310 3601852..3602211 + 360 WP_099863717.1 helix-turn-helix domain-containing protein -
XcfCFBP6988P_RS16315 3602447..3602728 + 282 WP_099801972.1 hypothetical protein -
XcfCFBP6988P_RS16320 3602725..3603051 + 327 WP_145958287.1 hypothetical protein -
XcfCFBP6988P_RS16325 3603072..3603302 + 231 WP_145958381.1 hypothetical protein -
XcfCFBP6988P_RS16330 3603420..3603728 + 309 WP_145958289.1 helix-turn-helix domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 3581701..3618402 36701


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-87)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11650.49 Da        Isoelectric Point: 9.3988

>T75852 WP_099802820.1 NZ_CP020979:c3598772-3598458 [Xanthomonas citri pv. phaseoli var. fuscans]
MIFVETPIFTASVTELLTDEQYGAFQSFLIAEPRAGDVIEQTGGLRKVRWSVAGKGKRGGVRVIYYFVDEADQIRLLLIY
KKGVQDDLTPSQKKVLKAIKDGWA

Download         Length: 315 bp

>T75852 NZ_CP020979:c3598772-3598458 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGATCTTCGTCGAGACCCCCATCTTCACTGCCTCGGTGACAGAGCTTTTGACCGATGAGCAGTACGGGGCGTTTCAGTC
ATTCCTGATCGCGGAGCCGCGCGCCGGCGACGTCATCGAGCAGACGGGCGGCCTGCGTAAGGTGCGCTGGTCTGTAGCGG
GGAAGGGCAAGCGCGGCGGGGTCAGGGTTATCTACTACTTCGTGGATGAGGCCGATCAGATCCGGCTGCTGCTGATCTAC
AAAAAGGGCGTGCAGGACGACCTGACGCCGTCCCAGAAGAAAGTGCTGAAAGCAATCAAAGACGGGTGGGCATGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10638.24 Da        Isoelectric Point: 10.7495

>AT75852 WP_099802819.1 NZ_CP020979:c3598458-3598168 [Xanthomonas citri pv. phaseoli var. fuscans]
MDKNLFAQLAESMEQMGEITRGERAPSREIHIDAVRVKEVRAATGLSQAKFAQVIDVQLGTLRNWEQGRRNPTGPARALL
RAIKKDPKSVLEALSA

Download         Length: 291 bp

>AT75852 NZ_CP020979:c3598458-3598168 [Xanthomonas citri pv. phaseoli var. fuscans]
ATGGACAAGAATCTCTTCGCACAACTCGCCGAGAGCATGGAACAGATGGGCGAGATCACTCGCGGCGAACGGGCTCCGTC
TCGCGAGATCCACATCGATGCCGTGCGGGTGAAAGAGGTCCGGGCCGCCACTGGGCTGTCACAGGCGAAATTCGCTCAGG
TGATCGACGTGCAGCTCGGCACCTTGCGTAATTGGGAGCAGGGGCGGCGGAACCCTACGGGGCCTGCCCGAGCGCTGCTG
CGTGCGATCAAGAAGGATCCCAAGAGCGTGCTGGAAGCTCTGTCAGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References