Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 1438847..1439330 | Replicon | chromosome |
Accession | NZ_CP020863 | ||
Organism | Streptococcus suis strain SC19 |
Toxin (Protein)
Gene name | relE | Uniprot ID | D5AIX4 |
Locus tag | B9H01_RS07235 | Protein ID | WP_012027435.1 |
Coordinates | 1438847..1439107 (-) | Length | 87 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A0Z8BIX7 |
Locus tag | B9H01_RS07240 | Protein ID | WP_012775256.1 |
Coordinates | 1439109..1439330 (-) | Length | 74 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
B9H01_RS07210 | 1434232..1435461 | - | 1230 | WP_012775253.1 | tetratricopeptide repeat protein | - |
B9H01_RS07215 | 1435451..1436617 | - | 1167 | WP_012775254.1 | AI-2E family transporter | - |
B9H01_RS07220 | 1436753..1437757 | + | 1005 | WP_012028380.1 | lactonase family protein | - |
B9H01_RS07225 | 1437821..1438006 | + | 186 | WP_002935693.1 | hypothetical protein | - |
B9H01_RS07230 | 1438039..1438680 | - | 642 | WP_012775255.1 | HAD family hydrolase | - |
B9H01_RS07235 | 1438847..1439107 | - | 261 | WP_012027435.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
B9H01_RS07240 | 1439109..1439330 | - | 222 | WP_012775256.1 | hypothetical protein | Antitoxin |
B9H01_RS07245 | 1439640..1440947 | - | 1308 | WP_002935704.1 | phosphopyruvate hydratase | - |
B9H01_RS07250 | 1441097..1441549 | + | 453 | WP_012028381.1 | DUF1694 domain-containing protein | - |
B9H01_RS07255 | 1441556..1441785 | - | 230 | Protein_1344 | hypothetical protein | - |
B9H01_RS07260 | 1441776..1442903 | - | 1128 | WP_012028382.1 | glycerate kinase | - |
B9H01_RS07265 | 1443011..1443661 | + | 651 | WP_012027441.1 | HAD family hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
flank | IS/Tn | - | - | 1444098..1445300 | 1202 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 87 a.a. Molecular weight: 10273.79 Da Isoelectric Point: 9.3944
>T75585 WP_012027435.1 NZ_CP020863:c1439107-1438847 [Streptococcus suis]
MYHLEYSKKAQKQIMKLDRQIQRLLFAWIDKHLEGTDNPRANGKGLTGNHANEWRYRIGDYRLICDIQDDKLVILALEFG
HRKDVY
MYHLEYSKKAQKQIMKLDRQIQRLLFAWIDKHLEGTDNPRANGKGLTGNHANEWRYRIGDYRLICDIQDDKLVILALEFG
HRKDVY
Download Length: 261 bp
>T75585 NZ_CP020863:c1439107-1438847 [Streptococcus suis]
ATGTATCATTTAGAGTATTCTAAAAAGGCTCAAAAGCAAATTATGAAATTAGATAGGCAAATTCAGAGGCTGTTGTTTGC
TTGGATTGATAAACACTTAGAAGGGACTGATAATCCACGCGCCAATGGTAAAGGTTTGACAGGCAATCATGCTAACGAGT
GGCGTTATCGTATCGGAGATTACCGACTGATTTGCGATATTCAAGATGATAAGTTGGTTATTTTAGCACTTGAGTTTGGA
CATCGTAAAGATGTCTATTGA
ATGTATCATTTAGAGTATTCTAAAAAGGCTCAAAAGCAAATTATGAAATTAGATAGGCAAATTCAGAGGCTGTTGTTTGC
TTGGATTGATAAACACTTAGAAGGGACTGATAATCCACGCGCCAATGGTAAAGGTTTGACAGGCAATCATGCTAACGAGT
GGCGTTATCGTATCGGAGATTACCGACTGATTTGCGATATTCAAGATGATAAGTTGGTTATTTTAGCACTTGAGTTTGGA
CATCGTAAAGATGTCTATTGA
Antitoxin
Download Length: 74 a.a. Molecular weight: 8566.55 Da Isoelectric Point: 4.4791
>AT75585 WP_012775256.1 NZ_CP020863:c1439330-1439109 [Streptococcus suis]
MSTVTIRLNQEEEVFFKSYAQLTGQSLSSLFKKALERDIEDEYDLKIYHQAYDEYKADPETISHADFKKELGL
MSTVTIRLNQEEEVFFKSYAQLTGQSLSSLFKKALERDIEDEYDLKIYHQAYDEYKADPETISHADFKKELGL
Download Length: 222 bp
>AT75585 NZ_CP020863:c1439330-1439109 [Streptococcus suis]
ATGAGTACAGTGACAATCAGATTAAATCAAGAAGAAGAAGTATTCTTTAAAAGCTATGCACAATTAACAGGTCAAAGTCT
TTCTAGCCTTTTTAAGAAAGCTTTGGAGCGTGATATTGAAGATGAGTATGATTTAAAAATCTATCATCAAGCTTATGATG
AGTACAAAGCAGATCCAGAAACAATTAGTCATGCTGATTTTAAGAAAGAGCTAGGATTATAG
ATGAGTACAGTGACAATCAGATTAAATCAAGAAGAAGAAGTATTCTTTAAAAGCTATGCACAATTAACAGGTCAAAGTCT
TTCTAGCCTTTTTAAGAAAGCTTTGGAGCGTGATATTGAAGATGAGTATGATTTAAAAATCTATCATCAAGCTTATGATG
AGTACAAAGCAGATCCAGAAACAATTAGTCATGCTGATTTTAAGAAAGAGCTAGGATTATAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2K1T1M7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Z8BIX7 |