Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2531171..2531688 Replicon chromosome
Accession NZ_CP020619
Organism Staphylococcus aureus strain JE2

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag B7H15_RS13335 Protein ID WP_000113262.1
Coordinates 2531171..2531437 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A5A8VWS3
Locus tag B7H15_RS13340 Protein ID WP_000584502.1
Coordinates 2531437..2531688 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B7H15_RS13310 2526597..2527133 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
B7H15_RS13315 2527366..2528190 - 825 WP_000572040.1 formate/nitrite transporter family protein -
B7H15_RS13320 2528407..2528589 - 183 WP_000230294.1 hypothetical protein -
B7H15_RS13325 2528673..2529140 - 468 WP_000153344.1 SRPBCC domain-containing protein -
B7H15_RS13330 2529326..2530876 - 1551 WP_000727762.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
B7H15_RS15330 2531065..2531136 - 72 Protein_2462 hypothetical protein -
B7H15_RS13335 2531171..2531437 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
B7H15_RS13340 2531437..2531688 - 252 WP_000584502.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
B7H15_RS13345 2531853..2531954 - 102 WP_001791744.1 hypothetical protein -
B7H15_RS13350 2531961..2532560 - 600 WP_000162813.1 DsbA family protein -
B7H15_RS13355 2532579..2532938 - 360 WP_000819847.1 DUF4467 domain-containing protein -
B7H15_RS13360 2533193..2534443 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
B7H15_RS13365 2534540..2535271 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
B7H15_RS13370 2535268..2535987 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T75200 WP_000113262.1 NZ_CP020619:c2531437-2531171 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T75200 NZ_CP020619:c2531437-2531171 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9417.65 Da        Isoelectric Point: 4.4702

>AT75200 WP_000584502.1 NZ_CP020619:c2531688-2531437 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSVMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT75200 NZ_CP020619:c2531688-2531437 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGTTATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
AlphaFold DB A0A5A8VWS3

References