Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 3948797..3949338 Replicon chromosome
Accession NZ_CP020509
Organism Escherichia coli strain 165

Toxin (Protein)


Gene name yafQ Uniprot ID E9TC49
Locus tag AWB10_RS20690 Protein ID WP_000615982.1
Coordinates 3949060..3949338 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID S1EWQ0
Locus tag AWB10_RS20685 Protein ID WP_000729704.1
Coordinates 3948797..3949057 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AWB10_RS20660 3943833..3944972 + 1140 WP_000785662.1 flagellar type III secretion system protein FlhB -
AWB10_RS20665 3944956..3947049 + 2094 WP_001140806.1 flagellar biosynthesis protein FlhA -
AWB10_RS20670 3947154..3947432 + 279 WP_000598760.1 type II toxin-antitoxin system HicA family toxin -
AWB10_RS20675 3947425..3947781 + 357 WP_001030484.1 type II toxin-antitoxin system HicB family antitoxin -
AWB10_RS20680 3947838..3948611 - 774 WP_000543899.1 C40 family peptidase -
AWB10_RS20685 3948797..3949057 + 261 WP_000729704.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
AWB10_RS20690 3949060..3949338 + 279 WP_000615982.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
AWB10_RS20695 3949494..3950234 + 741 WP_001225679.1 murein L,D-transpeptidase -
AWB10_RS20700 3950205..3950972 - 768 WP_000333380.1 class II glutamine amidotransferase -
AWB10_RS20705 3951178..3951756 - 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-84)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10816.59 Da        Isoelectric Point: 10.0702

>T74885 WP_000615982.1 NZ_CP020509:3949060-3949338 [Escherichia coli]
MIQRDIEYSGQFSKDVKVAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

>T74885 NZ_CP020509:3949060-3949338 [Escherichia coli]
ATGATTCAAAGGGATATTGAATACTCGGGACAATTTTCAAAGGATGTAAAAGTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9391.77 Da        Isoelectric Point: 5.0758

>AT74885 WP_000729704.1 NZ_CP020509:3948797-3949057 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGI

Download         Length: 261 bp

>AT74885 NZ_CP020509:3948797-3949057 [Escherichia coli]
ATGGCTGCTAACGCATTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCGGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCGTTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
PDB 4ML0
AlphaFold DB A0A0E0Y6Z6

References