Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) HipBST/HipA(toxin)
Location 4816401..4817752 Replicon chromosome
Accession NZ_CP020350
Organism Pectobacterium brasiliense strain SX309

Toxin (Protein)


Gene name HipT Uniprot ID -
Locus tag B5S52_RS21625 Protein ID WP_039510294.1
Coordinates 4816712..4817752 (+) Length 347 a.a.

Antitoxin (Protein)


Gene name HipS Uniprot ID -
Locus tag B5S52_RS21620 Protein ID WP_039463512.1
Coordinates 4816401..4816715 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HipA-like, C-terminal

(57-307)

Antitoxin

HipA, N-terminal subdomain 1

(5-98)


Sequences

Toxin        


Download         Length: 347 a.a.        Molecular weight: 39602.63 Da        Isoelectric Point: 6.7794

>T74347 WP_039510294.1 NZ_CP020350:4816712-4817752 [Pectobacterium brasiliense]
MTRCRILLTPLTHEEEIATGYSRKGLKHLAGKMHASPTLRFTRQQFMHDLPQAQKGMSISGYQPKIQLVLEEQTFTVVDH
QGLYILKPSPIEFPHLAENEHATMTLMARLGFAVPPHGLLRFKPEQADDEPEFAFVIKRFDRDEKTGHPIHQEQLDGAMG
IGEKFGKTHTDGRQYVSYERLALFLSKHVNDNIVFKIDLFRRIAYAYMLGNNDMHLRNFGLMHSRSGQLMLAPIYDFVSV
APYPTYFSSCFMALPLLIQEEGDEALAPGFETAYGEYLGMDFILFGQRIGLSENLTKKLLADFLKEAKCVESTYRDSFMP
ADAIETTLRCYRHRLNLMSILDAERI

Download         Length: 1041 bp

>T74347 NZ_CP020350:4816712-4817752 [Pectobacterium brasiliense]
ATGACAAGATGTCGAATTTTGCTGACACCGCTGACACACGAAGAAGAAATTGCCACAGGCTATAGCCGTAAAGGGTTGAA
GCATCTGGCGGGGAAAATGCACGCTTCCCCAACCTTACGTTTCACCCGCCAGCAATTTATGCACGACCTGCCACAAGCAC
AGAAAGGCATGAGTATCTCTGGCTATCAGCCCAAGATTCAGTTGGTATTAGAAGAACAGACGTTTACCGTCGTTGATCAT
CAAGGGCTATACATCCTCAAACCCTCTCCGATTGAATTTCCCCATTTGGCAGAAAATGAACATGCCACGATGACGCTAAT
GGCACGTCTGGGATTTGCCGTTCCACCACACGGGTTACTCCGTTTTAAACCGGAACAGGCGGATGACGAACCTGAGTTCG
CTTTCGTTATTAAGCGCTTCGACCGCGACGAAAAAACGGGTCACCCTATTCATCAGGAACAGTTGGACGGTGCGATGGGG
ATCGGTGAAAAATTCGGTAAAACACATACAGATGGCAGACAATACGTCAGTTATGAGCGGTTGGCTTTATTCCTTAGCAA
ACACGTTAATGACAATATCGTCTTCAAAATAGATCTGTTTCGCCGCATCGCTTACGCCTACATGTTGGGTAACAACGACA
TGCACCTGCGTAATTTTGGGCTGATGCATTCGCGCTCAGGCCAATTAATGCTGGCCCCTATTTATGACTTTGTTTCCGTC
GCCCCCTATCCCACCTATTTTTCTTCCTGTTTCATGGCATTGCCGCTGCTGATTCAAGAAGAGGGGGATGAGGCACTCGC
GCCAGGATTTGAAACTGCATACGGAGAATATCTTGGTATGGATTTCATTCTGTTCGGACAGCGTATTGGGCTGAGTGAAA
ACCTGACCAAAAAGCTATTGGCAGACTTCCTCAAAGAAGCTAAATGCGTTGAATCAACCTATCGAGATTCCTTTATGCCT
GCGGATGCTATTGAGACAACGCTGCGGTGCTATCGACACCGCCTGAATCTTATGAGCATTCTCGATGCAGAACGGATTTA
G

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11886.72 Da        Isoelectric Point: 9.7865

>AT74347 WP_039463512.1 NZ_CP020350:4816401-4816715 [Pectobacterium brasiliense]
MRRQVKVYLYGVHIGQLSQDDKGYLFEYKKSYIGPPLSLSLPIQTGTFRSKTLPPYFASLAPEGWLRRQYSQLQHLDEKD
LFGILIQNGKNLIGAVQLIAEDKS

Download         Length: 315 bp

>AT74347 NZ_CP020350:4816401-4816715 [Pectobacterium brasiliense]
ATGCGCCGTCAAGTAAAGGTCTATCTTTACGGTGTCCACATCGGCCAGCTAAGTCAGGACGATAAAGGCTATTTGTTTGA
ATATAAAAAGTCCTACATCGGCCCGCCATTATCACTGAGCCTACCGATACAGACCGGAACATTTCGCAGCAAGACATTAC
CGCCTTATTTTGCCTCGTTAGCTCCCGAAGGCTGGCTCCGGCGGCAGTACAGCCAGCTTCAGCATCTGGATGAGAAGGAT
TTATTTGGCATCCTCATTCAAAACGGTAAGAACCTGATCGGCGCAGTACAGCTGATCGCGGAGGATAAGTCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References