Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 3572637..3573236 | Replicon | chromosome |
| Accession | NZ_CP019967 | ||
| Organism | Rhodopseudomonas palustris strain YSC3 | ||
Toxin (Protein)
| Gene name | graT | Uniprot ID | - |
| Locus tag | RPYSC3_RS16455 | Protein ID | WP_107357551.1 |
| Coordinates | 3572637..3572921 (+) | Length | 95 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | RPYSC3_RS16460 | Protein ID | WP_107356106.1 |
| Coordinates | 3572934..3573236 (+) | Length | 101 a.a. |
Genomic Context
Location: 3567701..3567988 (288 bp)
Type: Others
Protein ID: WP_107356101.1
Type: Others
Protein ID: WP_107356101.1
Location: 3572637..3572921 (285 bp)
Type: Toxin
Protein ID: WP_107357551.1
Type: Toxin
Protein ID: WP_107357551.1
Location: 3572934..3573236 (303 bp)
Type: Antitoxin
Protein ID: WP_107356106.1
Type: Antitoxin
Protein ID: WP_107356106.1
Location: 3576286..3576702 (417 bp)
Type: Others
Protein ID: WP_107356108.1
Type: Others
Protein ID: WP_107356108.1
Location: 3568052..3568861 (810 bp)
Type: Others
Protein ID: WP_107356102.1
Type: Others
Protein ID: WP_107356102.1
Location: 3568968..3569516 (549 bp)
Type: Others
Protein ID: WP_107356103.1
Type: Others
Protein ID: WP_107356103.1
Location: 3569604..3571337 (1734 bp)
Type: Others
Protein ID: WP_107356104.1
Type: Others
Protein ID: WP_107356104.1
Location: 3571406..3572245 (840 bp)
Type: Others
Protein ID: WP_107356105.1
Type: Others
Protein ID: WP_107356105.1
Location: 3573420..3574277 (858 bp)
Type: Others
Protein ID: WP_107356107.1
Type: Others
Protein ID: WP_107356107.1
Location: 3574476..3576008 (1533 bp)
Type: Others
Protein ID: WP_107345049.1
Type: Others
Protein ID: WP_107345049.1
Location: 3576706..3576981 (276 bp)
Type: Others
Protein ID: WP_107356109.1
Type: Others
Protein ID: WP_107356109.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RPYSC3_RS16430 | 3567701..3567988 | + | 288 | WP_107356101.1 | hypothetical protein | - |
| RPYSC3_RS16435 | 3568052..3568861 | - | 810 | WP_107356102.1 | DUF1295 domain-containing protein | - |
| RPYSC3_RS16440 | 3568968..3569516 | - | 549 | WP_107356103.1 | hypothetical protein | - |
| RPYSC3_RS16445 | 3569604..3571337 | - | 1734 | WP_107356104.1 | bifunctional protein-serine/threonine kinase/phosphatase | - |
| RPYSC3_RS16450 | 3571406..3572245 | - | 840 | WP_107356105.1 | formate/nitrite transporter family protein | - |
| RPYSC3_RS16455 | 3572637..3572921 | + | 285 | WP_107357551.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| RPYSC3_RS16460 | 3572934..3573236 | + | 303 | WP_107356106.1 | HigA family addiction module antidote protein | Antitoxin |
| RPYSC3_RS16465 | 3573420..3574277 | - | 858 | WP_107356107.1 | SDR family oxidoreductase | - |
| RPYSC3_RS16470 | 3574476..3576008 | - | 1533 | WP_107345049.1 | acyl-CoA carboxylase subunit beta | - |
| RPYSC3_RS16475 | 3576286..3576702 | + | 417 | WP_107356108.1 | DUF4260 domain-containing protein | - |
| RPYSC3_RS16480 | 3576706..3576981 | - | 276 | WP_107356109.1 | EscU/YscU/HrcU family type III secretion system export apparatus switch protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 a.a. Molecular weight: 10496.14 Da Isoelectric Point: 10.3461
>T73631 WP_107357551.1 NZ_CP019967:3572637-3572921 [Rhodopseudomonas palustris]
MIQSFRGKFARAILQDRKAPKGLPADLLGTARRKLVQLNAAAALADLAIPPGNPLEALRGDLQGLHSIRINDQWRIVFRW
KDTGPEDVEIVDYH
MIQSFRGKFARAILQDRKAPKGLPADLLGTARRKLVQLNAAAALADLAIPPGNPLEALRGDLQGLHSIRINDQWRIVFRW
KDTGPEDVEIVDYH
Download Length: 285 bp
>T73631 NZ_CP019967:3572637-3572921 [Rhodopseudomonas palustris]
ATGATCCAGAGCTTTCGAGGCAAGTTTGCTCGGGCGATTTTGCAGGACCGGAAAGCCCCCAAGGGCCTTCCGGCCGACCT
CCTGGGCACTGCCCGGCGCAAATTGGTTCAGCTCAACGCCGCCGCTGCTCTGGCCGACCTTGCGATCCCTCCCGGCAATC
CCCTGGAAGCCCTACGCGGAGATTTGCAGGGTCTCCATTCAATCCGGATCAACGATCAGTGGCGGATCGTGTTTCGCTGG
AAAGACACTGGTCCGGAAGACGTCGAGATCGTCGACTATCACTAG
ATGATCCAGAGCTTTCGAGGCAAGTTTGCTCGGGCGATTTTGCAGGACCGGAAAGCCCCCAAGGGCCTTCCGGCCGACCT
CCTGGGCACTGCCCGGCGCAAATTGGTTCAGCTCAACGCCGCCGCTGCTCTGGCCGACCTTGCGATCCCTCCCGGCAATC
CCCTGGAAGCCCTACGCGGAGATTTGCAGGGTCTCCATTCAATCCGGATCAACGATCAGTGGCGGATCGTGTTTCGCTGG
AAAGACACTGGTCCGGAAGACGTCGAGATCGTCGACTATCACTAG
Antitoxin
Download Length: 101 a.a. Molecular weight: 11309.06 Da Isoelectric Point: 8.9890
>AT73631 WP_107356106.1 NZ_CP019967:3572934-3573236 [Rhodopseudomonas palustris]
MTKKLPPVHPGEILREEFLLPMNLSPYAVAAACGVPRTRIERLARQETPVTADTALRLARYFGTTPNFWMNLQAQYDLEV
AEDNSADELRRIKPIKSRAA
MTKKLPPVHPGEILREEFLLPMNLSPYAVAAACGVPRTRIERLARQETPVTADTALRLARYFGTTPNFWMNLQAQYDLEV
AEDNSADELRRIKPIKSRAA
Download Length: 303 bp
>AT73631 NZ_CP019967:3572934-3573236 [Rhodopseudomonas palustris]
ATGACGAAGAAACTACCCCCTGTTCACCCCGGCGAAATTCTCCGCGAAGAGTTTCTGCTGCCGATGAACCTGTCGCCCTA
CGCCGTCGCCGCAGCCTGCGGCGTACCGCGCACGCGCATCGAACGGCTGGCACGGCAGGAAACCCCAGTAACGGCGGACA
CCGCGCTGCGGCTGGCGAGATATTTCGGCACGACGCCGAATTTCTGGATGAACCTTCAGGCGCAGTACGATCTTGAAGTC
GCGGAAGACAACAGCGCCGACGAACTAAGGCGGATCAAGCCAATCAAGTCGAGAGCGGCCTAA
ATGACGAAGAAACTACCCCCTGTTCACCCCGGCGAAATTCTCCGCGAAGAGTTTCTGCTGCCGATGAACCTGTCGCCCTA
CGCCGTCGCCGCAGCCTGCGGCGTACCGCGCACGCGCATCGAACGGCTGGCACGGCAGGAAACCCCAGTAACGGCGGACA
CCGCGCTGCGGCTGGCGAGATATTTCGGCACGACGCCGAATTTCTGGATGAACCTTCAGGCGCAGTACGATCTTGAAGTC
GCGGAAGACAACAGCGCCGACGAACTAAGGCGGATCAAGCCAATCAAGTCGAGAGCGGCCTAA